Results for "transfer"
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RATT is software to transfer annotation from a reference (anno...enome. It was first developed to transfer annotations between different...ly versions. However, it can also transfer annotations between strains a...onella serotypes. RATT is able to transfer any entries present on a refe...3010 days ago
- ...seful not only for large-scalede novo predictions of horizontally transferred proteins, but can also serve as an independent quality control test for potential horizontal transfer candidates identified by alte...
2874 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is cr...trong phylogenetic signal distinguishing the transferred sequence from ancestral (v...lated strains. The method confirms candidate transferred genes based on the co...
2874 days ago
DeCoSTAR - Detection of Co-evolution
...ral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciation, duplication, loss, transfer, which are either given as in...2578 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...o the current assembly. An improved version, especially correction Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a tool to transfer the annotation from a referen...2550 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using genomes that have already been annotated. For example, w...2533 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...pproach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is present...The method is also useful for retrospective assessments of horizontal transfer prediction reliability, recog...2509 days ago
- Orthology relations can be used to transfer annotations from one gene (or protein) to another. Hence, detec...c era. Various genomic events, such as duplication and horizontal gene transfer, can cause erroneous assignme...
2364 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
...both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to indicate how likely it is to be horizontally transferred, and (iii) is fully auto...2300 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM appr...2310 days ago
