Frequently used bioinformatics tools for viral genome analysis !
...SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H. et al. Bioinformatics 25, 2078-9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. B...1056 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under ...1187 days ago
Genome Assembly Tools and Software - PART2 !!
...AssembliesReconciliator is the tool for merging assemblies. PhrapUMD 2 – Modified version of PhrapPhrap UMD consists of the UMD Trimmer, UMD Overlapper and a modifie...2694 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ directory compiled using g++ v4.8.5 and linked with libz v1.2.7 for Linux x86_64 system. If you cou...Tags: Ktrim, extra-fast, accurate, adapter, quality, trimmer, sequencing, data
1187 days ago