Results for "utility"
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Over the years most bioinformatics people amass a collection of small utility scripts which make their lives...ne else can contribute. Biocode is a curated repository of general-use utility scripts. Algorithms scripts...3671 days ago
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
1098 days ago
- Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would be for...
2872 days ago
Many-Core Engine (MCE) for Perl example
...ny-Core Engine. The various MCE options are described here. MCE::Signal Temporary directory creation, cleanup, and signal handling. MCE::Util Utility functions for Many-Core Engin...2657 days ago
- ...king overlaping contigs and gaps in to account. MUMmer's alignment generating programs, Nucmer and Promer are used followed by the 'delta-filter' utility function. Users could also ru...
2641 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...ogous genes found within a single genome, segmental genome duplications can be revealed. This software distribution includes both the DAGchainer utility and a Java-based graphical in...2639 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using genomes that have already been annotated. For example, whene...2539 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...rcial bioinformatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of traditional BLAST implemen...2482 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...ggle) scales to billions of intervals and is over three orders of magnitude faster than existing methods. Its speed extends the accessibility and utility of resources such as ENCODE,...2313 days ago
ARCS: scaffolding genome drafts with linked reads
...ABySS H.sapiensgenome assembly can be increased over six-fold, using moderate coverage (25-fold) Chromium data. We expect ARCS to have broad utility in harnessing the barcoding i...2257 days ago
