#!/usr/bin/env perl
#Uses: perl sub-seq.pl input.txt range
use strict;
use warnings;
my $end = pop;
my $start = pop;
local $/ = '>';
while (<>) {
chomp;
next unless /(.+)/;
my ($header) = "$/$1_$start-$end\n";
my $seq = ${^POSTMATCH};
$seq =~ s/\s//g;
print $header;
print +( substr $seq, $start - 1, $end ) . "\n";
}