Jit
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Installing pb-assembly on Linux !
By Jit 2273 days ago
[jnarayan@hmem00 ~]$ module avail
-------------------------------------------------------- /usr/share/Modules/modulefiles --------------------------------------------------------
Anaconda3/4.4.0 libreadline/6.3-foss-2016a
Armadillo/2.4.4-goolf-1.4.10-Python-2.7.3 libreadline/6.3-foss-2016b
arpack-ng/3.3.0-foss-2016a libreadline/7.0-GCCcore-6.4.0
ATLAS/3.8.4-gompi-1.1.0-no-OFED-LAPACK-3.4.0 libSM/1.2.2-foss-2016a
Autoconf/2.69 libsndfile/1.0.28-foss-2016a
Autoconf/2.69-foss-2016a libsndfile/1.0.28-GCCcore-6.4.0
Autoconf/2.69-foss-2016b LibTIFF/4.0.6-foss-2016a
Autoconf/2.69-GCC-4.8.2 LibTIFF/4.0.6-foss-2016b
Autoconf/2.69-GCCcore-6.4.0 LibTIFF/4.0.9-foss-2017b
Autoconf/2.69-goolf-1.4.10 libtool/2.4.6-foss-2016a
Automake/1.13.4-goolf-1.4.10 libtool/2.4.6-foss-2016b
Automake/1.14-GCC-4.8.2 libtool/2.4.6-GCCcore-6.4.0
Automake/1.15.1-GCCcore-6.4.0 libX11/1.6.3-foss-2016a
Automake/1.15-foss-2016a libXau/1.0.8-foss-2016a
Automake/1.15-foss-2016b libxc/3.0.0-foss-2016a
Autotools/20150215-foss-2016a libxcb/1.11.1-foss-2016a
Autotools/20150215-foss-2016b libXcursor/1.1.14-foss-2016a
Autotools/20170619-GCCcore-6.4.0 libXdamage/1.1.4-foss-2016a
BCFtools/1.3-foss-2016a libXdmcp/1.1.2-foss-2016a
Bert/0.9.0-82 libXext/1.3.3-foss-2016a
Bert/0.9.1 libXfixes/5.0.1-foss-2016a
Bert/2.0 libXfont/1.5.1-foss-2016a
binutils/2.25 libXfont/1.5.1-foss-2016a-freetype-2.6.3
binutils/2.25-GCCcore-4.9.3 libXft/2.3.2-foss-2016a
binutils/2.26 libXi/1.7.6-foss-2016a
binutils/2.26-GCCcore-5.4.0 libXinerama/1.1.3-foss-2016a
binutils/2.27 libxkbcommon/0.6.1-foss-2016a
binutils/2.28 libxml2/2.9.0-goolf-1.4.10
binutils/2.28-GCCcore-6.4.0 libxml2/2.9.3-foss-2016a
BioPerl/1.6.924-foss-2016a-Perl-5.22.1 libxml2/2.9.3-foss-2016a-Python-2.7.11
Biopython/1.65-foss-2016a-Python-2.7.11 libxml2/2.9.4-foss-2016a
Bison/3.0.4 libxml2/2.9.4-foss-2016b
Bison/3.0.4-foss-2016a libxml2/2.9.4-foss-2016b-Python-2.7.12
Bison/3.0.4-foss-2016b libxml2/2.9.4-GCCcore-6.4.0
Bison/3.0.4-GCCcore-4.9.3 libXmu/1.1.2-foss-2016a
Bison/3.0.4-GCCcore-5.4.0 libXpm/3.5.11-foss-2016a
Bison/3.0.4-GCCcore-6.4.0 libXrandr/1.5.0-foss-2016a
BLACS/1.1-foss-2016a libXrender/0.9.9-foss-2016a
BLACS/1.1-gompi-1.1.0-no-OFED libxslt/1.1.28-foss-2016a
blas/gcc/3.2.1 libXt/1.1.5-foss-2016a
BLAST+/2.3.0-foss-2016a-Python-2.7.11 libyaml/0.1.4-foss-2016a
boost/1.42 LLVM/3.7.1-foss-2016a
boost/1.46 LLVM/3.8.0-foss-2016a
boost/1.49 LLVM/3.8.1-foss-2016b
boost/1.55.0/gcc/4.7.3 LLVM/5.0.0-foss-2017b
Boost/1.49.0-goolf-1.4.10-Python-2.7.3 M4/1.4.16-GCC-4.8.2
Boost/1.58.0-foss-2016a-Python-2.7.11 M4/1.4.16-goolf-1.4.10
Boost/1.60.0-foss-2016a M4/1.4.17
Boost/1.61.0-foss-2016a-Python-3.6.3 M4/1.4.17-foss-2016a
Boost/1.61.0-foss-2016b M4/1.4.17-foss-2016b
Bowtie2/2.2.9-foss-2016a M4/1.4.17-GCCcore-4.9.3
bzip2/1.0.6-foss-2016a M4/1.4.17-GCCcore-5.4.0
bzip2/1.0.6-foss-2016b M4/1.4.18
bzip2/1.0.6-GCCcore-6.4.0 M4/1.4.18-GCCcore-6.4.0
bzip2/1.0.6-goalf-1.1.0-no-OFED makedepend/1.0.5-foss-2016a
bzip2/1.0.6-goolf-1.4.10 makeflow/5.2.3
cairo/1.14.10-GCCcore-6.4.0 Mako/1.0.4-foss-2016b-Python-2.7.12
cairo/1.14.6-foss-2016a Mako/1.0.7-foss-2017b-Python-2.7.14
cairo/1.14.6-foss-2016b matplotlib/1.5.1-foss-2016a-Python-2.7.11
canopy/1.1.0 MCL/14.137-foss-2016a
cctools/5.2.3 mcr/R2008A_v79
CGAL/4.8.1-foss-2016b mcr/R2010A_v713
Circuitscape/4.0.5 mcr/R2013A_v81
CLHEP/2.1.1.0-goolf-1.4.10 mcr/R2014A_v83
cmake/2.8.11.2 mcr/R2015a
CMake/2.8.4-goolf-1.4.10 mcr/v713
CMake/3.2.1-foss-2016a mcr/v717
CMake/3.3.1 mcr/v79
CMake/3.4.1-foss-2016a mcr/v80
CMake/3.4.3-foss-2016a MCR/R2015a
CMake/3.5.2-foss-2016a Mesa/11.1.2-foss-2016a
CMake/3.5.2-foss-2016b Mesa/11.2.1-foss-2016a
CMake/3.6.1-foss-2016b Mesa/12.0.2-foss-2016b
CMake/3.6.2-foss-2016a Mesa/17.2.5-foss-2017b
CMake/3.9.1-GCCcore-6.4.0 METIS/5.1.0-foss-2016a
CMake/3.9.5-GCCcore-6.4.0 METIS/5.1.0-foss-2016a-32bitIDX
Coreutils/8.22-goolf-1.4.10 METIS/5.1.0-foss-2016b
cuda/4.2 Miniconda2/4.3.21
CUDA/5.5.22-GCC-4.7.2 module-cvs
cURL/7.47.0-foss-2016a module-git
cURL/7.49.1-foss-2016a module-info
cURL/7.49.1-foss-2016b modules
cURL/7.55.1-GCCcore-6.4.0 MPFR/3.1.4-foss-2016b
damageproto/1.2.1-foss-2016a mpich/1.2.7/pgi
DB/6.2.23-foss-2016a mpich2/1.2.1/gcc-4.4.4
DB_File/1.835-foss-2016a-Perl-5.22.1 MUMPS/5.0.1-foss-2016a-metis
DMTCP/2.4.5 NASM/2.11.08-foss-2016a
dot NASM/2.12.02-foss-2016a
Doxygen/1.8.11-foss-2016a NASM/2.12.02-foss-2016b
Doxygen/1.8.11-foss-2016b NASM/2.13.01-GCCcore-6.4.0
Doxygen/1.8.13-GCCcore-6.4.0 ncurses/5.9
EasyBuild/3.4.1 ncurses/5.9-foss-2016a
EasyBuild/3.6.2 ncurses/5.9-GCC-4.7.2
Eigen/3.2.9-foss-2016b ncurses/5.9-goalf-1.1.0-no-OFED
ETSF_IO/1.0.4-foss-2016a ncurses/5.9-goolf-1.4.10
eudev/3.1.5-foss-2016a ncurses/6.0
expat/2.1.0-foss-2016a ncurses/6.0-foss-2016a
expat/2.1.0-goolf-1.4.10 ncurses/6.0-foss-2016b
expat/2.1.1-foss-2016a ncurses/6.0-GCCcore-6.4.0
expat/2.2.0-foss-2016a netcdf/intel/64/3.6.0
expat/2.2.0-foss-2016b netCDF/4.4.0-foss-2016a
expat/2.2.4-GCCcore-6.4.0 netCDF/4.4.1-foss-2016a
FastME/2.1.5-foss-2016a netCDF/4.4.1-foss-2016b
FFTW/3.3.1-gompi-1.1.0-no-OFED netCDF/4.5.0-foss-2017b
FFTW/3.3.3-gompi-1.4.10 netCDF-Fortran/4.4.3-foss-2016a
FFTW/3.3.3-gompi-1.6.10 nettle/3.2-foss-2016b
FFTW/3.3.4-gompi-2016a nettle/3.3-GCCcore-6.4.0
FFTW/3.3.4-gompi-2016b NLopt/2.4.2-foss-2016a
FFTW/3.3.6-gompi-2017b NLopt/2.4.2-foss-2016b
fftw2/gcc/64/double/2.1.5 NLopt/2.4.2-foss-2017b
fftw2/gcc/64/float/2.1.5 null
fftw2/intel/64/double/2.1.5 numactl/2.0.11-GCC-4.9.3-2.25
fftw2/intel/64/float/2.1.5 numactl/2.0.11-GCC-5.4.0-2.26
fftw2/pgi/64/double/2.1.5 numactl/2.0.11-GCCcore-6.4.0
fftw2/pgi/64/float/2.1.5 numpy/1.6.2-goolf-1.4.10-Python-2.7.3
fftw3/gcc/64/3.1.2 numpy/1.8.2-foss-2016a-Python-2.7.11
fftw3/intel/64/3.1.2 octave/3.6.1
fftw3/pgi/64/3.1.2 Octave/4.2.1-foss-2016a
fireworks/python-2.7.3 Octave/4.4.0-foss-2016a
fixesproto/5.0-foss-2016a octopus/4.0.1
flex/2.5.39 Octopus/7.0-foss-2016a
flex/2.5.39-foss-2016a Octopus/7.1-foss-2016a
flex/2.5.39-GCCcore-4.9.3 OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0
flex/2.6.0 OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
flex/2.6.0-foss-2016a OpenBLAS/0.2.20-GCC-6.4.0-2.28
flex/2.6.0-foss-2016b OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2
flex/2.6.0-GCCcore-5.4.0 OpenBLAS/0.2.8-gompi-1.6.10-LAPACK-3.4.2
flex/2.6.3 OpenFOAM/1.6-ext/DP
flex/2.6.4-GCCcore-6.4.0 OpenFOAM/2.0.x/DP
FLTK/1.3.3-foss-2016a OpenFOAM/2.1.1/DP
fluka/2011.2b-5 OpenFOAM/2.2.x/DP
fluka/2011.2c-0 OpenFOAM/3.0.0-foss-2016a
fluka/2011.2c-0-2015-07-01 OpenFOAM/DP/1.6-ext
fontconfig/2.11.94-foss-2016a OpenFOAM/DP/2.0.x
fontconfig/2.11.95-foss-2016a OpenFOAM/DP/2.1.1
fontconfig/2.12.1-foss-2016a OpenFOAM/DP/2.2.x
fontconfig/2.12.1-foss-2016b openmpi/1.4.5/gnu64-4.7.3
fontconfig/2.12.4-GCCcore-6.4.0 openmpi/1.4.5/intel-11.1.073
fontsproto/2.1.3-foss-2016a openmpi/1.4.5/pgi-11.2-1
foss/2016a openmpi/1.5.3/gcc-4.4.4
foss/2016b openmpi/1.5.3/intel-12.0.0.084
foss/2017b OpenMPI/1.10.2-GCC-4.9.3-2.25
freeglut/3.0.0-foss-2016a OpenMPI/1.10.3-GCC-5.4.0-2.26
freetype/2.6.2-foss-2016a OpenMPI/1.4.5-GCC-4.6.3-no-OFED
freetype/2.6.3-foss-2016a OpenMPI/1.6.4-GCC-4.7.2
freetype/2.6.5-foss-2016a OpenMPI/1.7.3-GCC-4.8.2
freetype/2.6.5-foss-2016b OpenMPI/2.0.2-GCC-6.3.0-2.27
freetype/2.8-GCCcore-6.4.0 OpenMPI/2.1.1-GCC-6.4.0-2.28
gcc/4.7.2 OrthoFinder/2.2.7
GCC/4.6.3 pandas/0.18.0-foss-2016a-Python-2.7.11
GCC/4.7.2 Pango/1.39.0-foss-2016a
GCC/4.8.1 Pango/1.40.3-foss-2016b
GCC/4.8.2 parallel/20130122-goolf-1.4.10
GCC/4.9.3-2.25 ParaView/5.2.0-foss-2016b-mpi
GCC/5.4.0-2.26 ParMETIS/4.0.3-foss-2016a
GCC/6.4.0-2.28 PCRE/8.38-foss-2016a
GCCcore/4.9.3 PCRE/8.38-foss-2016b
GCCcore/5.4.0 PCRE/8.39-foss-2016a
GCCcore/6.4.0 PCRE/8.39-foss-2016b
GDAL/1.9.2-goolf-1.4.10 PCRE/8.41-GCCcore-6.4.0
GDAL/2.1.0-foss-2016a Perl/5.16.3-goolf-1.4.10
GDAL/2.1.0-foss-2016b Perl/5.22.1-foss-2016a
GDAL/2.2.3-foss-2017b-Python-2.7.14 Perl/5.24.0-foss-2016b
Geant4/9.5.p01-goolf-1.4.10 Perl/5.26.0-GCCcore-6.4.0
GEOS/3.3.5-goolf-1.4.10 PETSc/3.1-p8/gcc444-openmpi153
GEOS/3.6.2-foss-2017b-Python-2.7.14 PETSc/3.4.2/gcc-4.4.4
gettext/0.19.6 PETSc/3.4.2/intel-13.0.1
gettext/0.19.6-foss-2016a pgi/11.2-1
gettext/0.19.7-foss-2016a pixman/0.34.0-foss-2016a
gettext/0.19.8 pixman/0.34.0-foss-2016b
gettext/0.19.8.1 pixman/0.34.0-GCCcore-6.4.0
gettext/0.19.8.1-GCCcore-6.4.0 pkg-config/0.29.1-foss-2016a
gettext/0.19.8-foss-2016a pkg-config/0.29.1-foss-2016b
gettext/0.19.8-foss-2016b pkg-config/0.29.2-GCCcore-6.4.0
gimli/0.9.1 pkg-config/0.29-foss-2016a
gimli/r310 PROJ/4.8.0-goolf-1.4.10
git/2.2.2 PROJ/4.9.2-foss-2016a
GL2PS/1.3.9-foss-2016a PROJ/4.9.2-foss-2016b
GLib/2.47.5-foss-2016a PROJ/4.9.3-foss-2017b
GLib/2.48.0-foss-2016a pybert/2.2.0
GLib/2.49.5-foss-2016b pybert/2.2.6-pygimli-1.0.5-Python-3.6.3
GLib/2.53.5-GCCcore-6.4.0 pybert/2.2.6-pygimli-1.0.6-Python-3.6.3
GLPK/4.58-foss-2016a pygimli/0.91
glproto/1.4.17-foss-2016a pygimli/1.0.5-Python-3.6.3-foss2016a
GMP/6.1.0-foss-2016a pygimli/1.0.6-Python-3.6.3-foss2016a
GMP/6.1.1-foss-2016a pysqlite/2.6.3-goolf-1.4.10-Python-2.7.3
GMP/6.1.1-foss-2016b pysqlite/2.8.2-foss-2016a-Python-2.7.11
GMP/6.1.2-GCCcore-6.4.0 python/2.7.3
gmsh/2018-02-19-snapshot Python/2.7.11-foss-2016a
gmsh/2.9.1-foss-2016a Python/2.7.12-foss-2016a
gmsh/3.0.6-foss-2016a Python/2.7.12-foss-2016b
gmsh/3.0.6-precompiled Python/2.7.14-foss-2017b
gnuplot/5.0.3-foss-2016a Python/2.7.14-GCCcore-6.4.0-bare
gnuplot/5.0.5-foss-2016b Python/2.7.3-goolf-1.4.10
goalf/1.1.0-no-OFED Python/3.2.3-goalf-1.1.0-no-OFED
GObject-Introspection/1.47.1-foss-2016a Python/3.3.2-goolf-1.4.10
GObject-Introspection/1.49.1-foss-2016b Python/3.4.3-foss-2016a
gompi/1.1.0-no-OFED Python/3.6.3-foss-2016a
gompi/1.4.10 Qhull/2015.2-foss-2016a
gompi/1.6.10 qrupdate/1.1.2-foss-2016a
gompi/2016a Qt/4.8.7-foss-2016a
gompi/2016b Qt/4.8.7-foss-2016b
gompi/2017b Qt5/5.7.0-foss-2016a
goolf/1.4.10 R/3.0.1
goolf/1.6.10 R/3.0.1-goolf-1.4.10-bare
gperf/3.0.4-foss-2016a R/3.0.2
gperf/3.0.4-goolf-1.4.10 R/3.1.0-GCC-4.8.2
gperf/3.1-GCCcore-6.4.0 R/3.1.0-goolf-1.6.10
Grace/5.1.24 R/3.1.0-intel-2013.0.028
GraphicsMagick/1.3.23-foss-2016a R/3.1.2-goolf-1.6.10
gromacs/double/4.5.5 R/3.2.3-goolf-1.4.10
gromacs/single/4.5.5 R/3.3.1-foss-2016a
gsl/1.16/gcc-4.7.2 R/3.3.1-foss-2016b
GSL/2.1-foss-2016a R/3.4.3-foss-2017b-X11-20171023
HarfBuzz/1.1.3-foss-2016a ragel/6.8
HarfBuzz/1.3.1-foss-2016b randrproto/1.5.0-foss-2016a
HDF5/1.10.1-foss-2017b renderproto/0.11-foss-2016a
HDF5/1.8.16-foss-2016a SAMtools/1.3.1-foss-2016a
HDF5/1.8.16-foss-2016a-serial ScaLAPACK/1.8.0-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0-BLACS-1.1
HDF5/1.8.17-foss-2016a ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2
HDF5/1.8.17-foss-2016b ScaLAPACK/2.0.2-gompi-1.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2
help2man/1.47.4 ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0
help2man/1.47.4-GCCcore-6.4.0 ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
HTSlib/1.3.1-foss-2016a ScaLAPACK/2.0.2-gompi-2017b-OpenBLAS-0.2.20
hwloc/1.11.2-GCC-4.9.3-2.25 scipy/0.11.0-goolf-1.4.10-Python-2.7.3
hwloc/1.11.3-GCC-5.4.0-2.26 SCOTCH/6.0.4-foss-2016a
hwloc/1.11.7-GCCcore-6.4.0 SCOTCH/6.0.4-foss-2016b
hwloc/1.6.2-GCC-4.7.2 SIP/4.19-foss-2016a-Python-2.7.12
hwloc/1.7.2-GCC-4.8.2 spines/Spines_release_1.15
ICU/61.1-GCCcore-6.4.0 SQLite/3.13.0-foss-2016a
inputproto/2.3.1-foss-2016a SQLite/3.13.0-foss-2016b
intel/clusterstudio/2013.0.028 SQLite/3.20.1-GCCcore-6.4.0
intel/clusterstudio/advisor/2013.1 SQLite/3.8.1-goolf-1.4.10
intel/clusterstudio/amplifier/2013.5 SQLite/3.9.2-foss-2016a
intel/clusterstudio/compiler/13.0.1.117 STAR/2.4.0-goolf-1.6.10
intel/clusterstudio/impi/4.1.0p-024 stress/1.0.4
intel/clusterstudio/inspector/2013.2 SuiteSparse/4.5.1-foss-2016a-METIS-5.1.0
intel/clusterstudio/trace/8.1.0.024 SuiteSparse/4.5.3-foss-2016a-ParMETIS-4.0.3
intel/compiler/11.1.038 SUNDIALS/2.7.0-foss-2016a
intel/compiler/11.1.073 SWIG/3.0.12-foss-2017b-Python-2.7.14
intel/compiler/12.0.0.084 Szip/2.1.1-GCCcore-6.4.0
intel/compiler/13.0.1.117 Szip/2.1-foss-2016a
intel/compilerpro/12.0.0.084 Szip/2.1-foss-2016b
intel/compilerpro/13.0.1.117 Tcl/8.6.1-goolf-1.4.10
intltool/0.51.0-foss-2016a-Perl-5.22.1 Tcl/8.6.4-foss-2016a
intltool/0.51.0-foss-2016b-Perl-5.24.0 Tcl/8.6.5-foss-2016a
intltool/0.51.0-GCCcore-6.4.0-Perl-5.26.0 Tcl/8.6.5-foss-2016b
JasPer/2.0.14-GCCcore-6.4.0 Tcl/8.6.7-GCCcore-6.4.0
Java/1.7.0_21 Theano/0.5.0-goolf-1.4.10-Python-2.7.3
Java/1.8.0_152 Tk/8.6.4-foss-2016a-no-X11
Java/1.8.0_31 Tk/8.6.5-foss-2016a
Java/1.8.0_72 Tk/8.6.5-foss-2016b
Java/1.8.0_92 Tk/8.6.7-foss-2017b
Julia/0.6.2 use.own
kbproto/1.0.7-foss-2016a util-linux/2.31-GCCcore-6.4.0
lapack/gcc/3.2.1 X11/20160819-foss-2016b
LAPACK/3.4.0-gompi-1.1.0-no-OFED X11/20171023-GCCcore-6.4.0
libcerf/1.4-foss-2016a xcb-proto/1.11
libcerf/1.5-foss-2016a xcb-util/0.4.0-foss-2016a
libcerf/1.5-foss-2016b xcb-util-image/0.4.0-foss-2016a
libdrm/2.4.67-foss-2016a xcb-util-keysyms/0.4.0-foss-2016a
libdrm/2.4.68-foss-2016a xcb-util-renderutil/0.3.9-foss-2016a
libdrm/2.4.70-foss-2016b xcb-util-wm/0.4.1-foss-2016a
libdrm/2.4.88-GCCcore-6.4.0 xextproto/7.3.0-foss-2016a
libffi/3.2.1-foss-2016a xineramaproto/1.2.1-foss-2016a
libffi/3.2.1-foss-2016b XKeyboardConfig/2.17-foss-2016a
libffi/3.2.1-GCCcore-6.4.0 XML-LibXML/2.0018-goolf-1.4.10-Perl-5.16.3
libfontenc/1.1.3-foss-2016a XML-Parser/2.41-goolf-1.4.10-Perl-5.16.3
libgd/2.1.1-foss-2016a XML-Parser/2.44_01-foss-2016b-Perl-5.24.0
libgd/2.2.3-foss-2016a XML-Parser/2.44_01-GCCcore-6.4.0-Perl-5.26.0
libgd/2.2.3-foss-2016b XML-Parser/2.44-foss-2016a-Perl-5.22.1
libGLU/9.0.0-foss-2016a XML-Simple/2.20-goolf-1.4.10-Perl-5.16.3
libGLU/9.0.0-foss-2016a-Mesa-11.2.1 xorg-macros/1.19.0-foss-2016a
libGLU/9.0.0-foss-2016b xprop/1.2.2-foss-2016a
libGLU/9.0.0-foss-2017b xproto/7.0.28-foss-2016a
libICE/1.0.9-foss-2016a xtrans/1.3.5-foss-2016a
libjpeg-turbo/1.4.2-foss-2016a XZ/5.2.2-foss-2016a
libjpeg-turbo/1.5.0-foss-2016a XZ/5.2.2-foss-2016b
libjpeg-turbo/1.5.0-foss-2016b XZ/5.2.2-GCCcore-5.4.0
libjpeg-turbo/1.5.2-GCCcore-6.4.0 XZ/5.2.3-GCCcore-6.4.0
libpciaccess/0.13.4-foss-2016a zlib/1.2.11
libpng/1.6.21-foss-2016a zlib/1.2.11-GCCcore-6.4.0
libpng/1.6.23-foss-2016a zlib/1.2.5-goolf-1.4.10
libpng/1.6.23-foss-2016b zlib/1.2.7-goalf-1.1.0-no-OFED
libpng/1.6.24-foss-2016a zlib/1.2.7-goolf-1.4.10
libpng/1.6.24-foss-2016b zlib/1.2.8
libpng/1.6.2-goolf-1.4.10 zlib/1.2.8-foss-2016a
libpng/1.6.32-GCCcore-6.4.0 zlib/1.2.8-foss-2016b
libpng/1.6.6-goolf-1.4.10 zlib/1.2.8-GCCcore-4.9.3
libpthread-stubs/0.3-foss-2016a zlib/1.2.8-GCCcore-5.4.0
libreadline/6.2-goalf-1.1.0-no-OFED zlib/1.2.8-goolf-1.4.10
libreadline/6.2-goolf-1.4.10
----------------------------------------------- /opt/cecisw/arch/easybuild//default//modules/all -----------------------------------------------
binutils/2.27-GCCcore-6.3.0 GCC/6.3.0-2.27 hwloc/1.11.5-GCC-6.3.0-2.27 zlib/1.2.11-GCCcore-6.3.0
Bison/3.0.4-GCCcore-6.3.0 GCCcore/6.3.0 M4/1.4.18-GCCcore-6.3.0
flex/2.6.3-GCCcore-6.3.0 help2man/1.47.4-GCCcore-6.3.0 numactl/2.0.11-GCC-6.3.0-2.27
[jnarayan@hmem00 ~]$ module load Anaconda3/4.4.0
[jnarayan@hmem00 ~]$ conda config --add channels defaults
[jnarayan@hmem00 ~]$ conda config --add channels bioconda
[jnarayan@hmem00 ~]$ conda config --add channels conda-forge
[jnarayan@hmem00 ~]$ conda create -n denovo_asm
[jnarayan@hmem00 ~]$ source activate denovo_asm
(denovo_asm) [jnarayan@hmem00 ~]$ conda install -c bioconda pb-assembly
Fetching package metadata ...........
Solving package specifications:
PackageNotFoundError: Dependencies missing in current linux-64 channels:
- pb-assembly -> genomicconsensus -> python-consensuscore >=1.1.1 -> libstdcxx-ng >=4.9
- pb-assembly -> pb-dazzler -> libgcc-ng >=4.9
- pb-assembly -> pb-falcon >=0.2.0 -> python-msgpack
- pb-assembly -> mummer4 -> perl 5.22.0*
Close matches found; did you mean one of these?
libgcc-ng: libgcc
perl: perl-b, petl, pepr
(and similarly for the other packages)
(denovo_asm) [jnarayan@hmem00 ~]$ conda list
# packages in environment at /home/unamur/URBE/jnarayan/.conda/envs/denovo_asm:
#
(denovo_asm) [jnarayan@hmem00 ~]$ conda config --add channels defaults
Warning: 'defaults' already in 'channels' list, moving to the top
(denovo_asm) [jnarayan@hmem00 ~]$ conda config --add channels bioconda
(denovo_asm) [jnarayan@hmem00 ~]$ conda config --add channels conda-forge
(denovo_asm) [jnarayan@hmem00 ~]$ conda install bwa
Fetching package metadata .............
Solving package specifications: .
Package plan for installation in environment /home/unamur/URBE/jnarayan/.conda/envs/denovo_asm:
The following NEW packages will be INSTALLED:
bwa: 0.7.17-ha92aebf_3 bioconda
libgcc-ng: 7.2.0-hdf63c60_3 conda-forge
perl: 5.26.2-h470a237_0 conda-forge
zlib: 1.2.11-h470a237_3 conda-forge
Proceed ([y]/n)? y
libgcc-ng-7.2. 100% |################################| Time: 0:00:01 5.16 MB/s
perl-5.26.2-h4 100% |################################| Time: 0:00:00 17.85 MB/s
zlib-1.2.11-h4 100% |################################| Time: 0:00:00 6.23 MB/s
bwa-0.7.17-ha9 100% |################################| Time: 0:00:00 23.66 MB/s
(denovo_asm) [jnarayan@hmem00 ~]$ conda list
# packages in environment at /home/unamur/URBE/jnarayan/.conda/envs/denovo_asm:
#
bwa 0.7.17 ha92aebf_3 bioconda
libgcc-ng 7.2.0 hdf63c60_3 conda-forge
perl 5.26.2 h470a237_0 conda-forge
zlib 1.2.11 h470a237_3 conda-forge
(denovo_asm) [jnarayan@hmem00 ~]$ conda install samtools
Fetching package metadata .............
Solving package specifications: .
Package plan for installation in environment /home/unamur/URBE/jnarayan/.conda/envs/denovo_asm:
The following NEW packages will be INSTALLED:
bzip2: 1.0.6-h470a237_2 conda-forge
ca-certificates: 2018.8.24-ha4d7672_0 conda-forge
curl: 7.61.1-h74213dd_2 conda-forge
krb5: 1.16.1-hbb41f41_0 conda-forge
libcurl: 7.61.1-hbdb9355_2 conda-forge
libdeflate: 1.0-h470a237_0 bioconda
libedit: 3.1.20170329-haf1bffa_1 conda-forge
libssh2: 1.8.0-h5b517e9_2 conda-forge
libstdcxx-ng: 7.2.0-hdf63c60_3 conda-forge
ncurses: 6.1-hfc679d8_1 conda-forge
openssl: 1.0.2p-h470a237_0 conda-forge
samtools: 1.9-h8ee4bcc_1 bioconda
tk: 8.6.8-ha92aebf_0 conda-forge
xz: 5.2.4-h470a237_1 conda-forge
Proceed ([y]/n)? y
ca-certificate 100% |################################| Time: 0:00:00 496.03 kB/s
libstdcxx-ng-7 100% |################################| Time: 0:00:00 3.08 MB/s
bzip2-1.0.6-h4 100% |################################| Time: 0:00:00 22.55 MB/s
libdeflate-1.0 100% |################################| Time: 0:00:00 2.98 MB/s
ncurses-6.1-hf 100% |################################| Time: 0:00:00 19.67 MB/s
openssl-1.0.2p 100% |################################| Time: 0:00:00 16.63 MB/s
xz-5.2.4-h470a 100% |################################| Time: 0:00:00 13.07 MB/s
libedit-3.1.20 100% |################################| Time: 0:00:00 8.84 MB/s
libssh2-1.8.0- 100% |################################| Time: 0:00:00 11.11 MB/s
tk-8.6.8-ha92a 100% |################################| Time: 0:00:00 22.37 MB/s
krb5-1.16.1-hb 100% |################################| Time: 0:00:00 20.43 MB/s
libcurl-7.61.1 100% |################################| Time: 0:00:00 15.26 MB/s
curl-7.61.1-h7 100% |################################| Time: 0:00:00 7.61 MB/s
samtools-1.9-h 100% |################################| Time: 0:00:00 15.03 MB/s
(denovo_asm) [jnarayan@hmem00 ~]$ conda install -c bioconda pb-assembly
Fetching package metadata .............
Solving package specifications: .
Package plan for installation in environment /home/unamur/URBE/jnarayan/.conda/envs/denovo_asm:
The following NEW packages will be INSTALLED:
asn1crypto: 0.24.0-py27_1003 conda-forge
avro: 1.8.0-py27_0 bioconda
bcftools: 1.9-h4da6232_0 bioconda
bedtools: 2.27.1-he941832_2 bioconda
blas: 1.0-mkl
blasr: 5.3.2-hac9d22c_3 bioconda
blasr_libcpp: 5.3.1-hac9d22c_2 bioconda
certifi: 2018.8.24-py27_1001 conda-forge
cffi: 1.11.5-py27h5e8e0c9_1 conda-forge
chardet: 3.0.4-py27_1003 conda-forge
cryptography: 2.3.1-py27hdffb7b8_0 conda-forge
cryptography-vectors: 2.3.1-py27_1000 conda-forge
cython: 0.28.5-py27hfc679d8_0 conda-forge
decorator: 4.3.0-py_0 conda-forge
enum34: 1.1.6-py27_1001 conda-forge
future: 0.16.0-py27_1002 conda-forge
genomicconsensus: 2.3.2-py27_1 bioconda
h5py: 2.8.0-py27h7eb728f_3 conda-forge
hdf5: 1.10.2-hc401514_2 conda-forge
htslib: 1.7-0 bioconda
idna: 2.7-py27_1002 conda-forge
ipaddress: 1.0.22-py_1 conda-forge
iso8601: 0.1.12-py_1 conda-forge
libffi: 3.2.1-hfc679d8_5 conda-forge
libgcc: 7.2.0-h69d50b8_2 conda-forge
libgfortran: 3.0.0-1 conda-forge
linecache2: 1.0.0-py_1 conda-forge
minimap2: 2.12-ha92aebf_0 bioconda
mkl: 2017.0.3-0
mummer4: 4.0.0beta2-pl526hfc679d8_3 bioconda
networkx: 2.2-py_1 conda-forge
nim-falcon: 0.0.0-0 bioconda
numpy: 1.13.1-py27_0
pb-assembly: 0.0.1-py27_0 bioconda
pb-dazzler: 0.0.0-h470a237_0 bioconda
pb-falcon: 0.2.4-py27ha92aebf_0 bioconda
pbalign: 0.3.1-py27_0 bioconda
pbbam: 0.18.0-h1310cd9_1 bioconda
pbcommand: 1.1.1-py27h24bf2e0_1 bioconda
pbcore: 1.5.1-py27_1 bioconda
pip: 18.1-py27_1000 conda-forge
pycparser: 2.19-py_0 conda-forge
pyopenssl: 18.0.0-py27_1000 conda-forge
pysam: 0.14.1-py27hae42fb6_1 bioconda
pysocks: 1.6.8-py27_1002 conda-forge
python: 2.7.15-h33da82c_1 conda-forge
python-consensuscore: 1.1.1-py27h02d93b8_1 bioconda
python-consensuscore2: 3.1.0-py27_1 bioconda
python-edlib: 1.2.3-py27h470a237_1 bioconda
python-intervaltree: 2.1.0-py_0 bioconda
python-msgpack: 0.5.6-py27h470a237_0 bioconda
python-sortedcontainers: 2.0.4-py_0 bioconda
pytz: 2018.5-py_0 conda-forge
readline: 7.0-haf1bffa_1 conda-forge
requests: 2.19.1-py27_1 conda-forge
setuptools: 40.4.3-py27_0 conda-forge
six: 1.11.0-py27_1001 conda-forge
sqlite: 3.25.2-hb1c47c0_0 conda-forge
traceback2: 1.4.0-py27_0 conda-forge
unittest2: 1.1.0-py_0 conda-forge
urllib3: 1.23-py27_1 conda-forge
wheel: 0.32.1-py27_0 conda-forge
Proceed ([y]/n)? y
blas-1.0-mkl.t 100% |################################################################################################| Time: 0:00:00 794.99 kB/s
libgfortran-3. 100% |################################################################################################| Time: 0:00:00 649.90 kB/s
mkl-2017.0.3-0 100% |################################################################################################| Time: 0:00:05 24.66 MB/s
nim-falcon-0.0 100% |################################################################################################| Time: 0:00:00 567.36 kB/s
libffi-3.2.1-h 100% |################################################################################################| Time: 0:00:00 3.77 MB/s
libgcc-7.2.0-h 100% |################################################################################################| Time: 0:00:00 2.60 MB/s
pb-dazzler-0.0 100% |################################################################################################| Time: 0:00:00 3.76 MB/s
bedtools-2.27. 100% |################################################################################################| Time: 0:00:00 7.25 MB/s
hdf5-1.10.2-hc 100% |################################################################################################| Time: 0:00:00 11.66 MB/s
minimap2-2.12- 100% |################################################################################################| Time: 0:00:00 12.76 MB/s
mummer4-4.0.0b 100% |################################################################################################| Time: 0:00:00 23.60 MB/s
readline-7.0-h 100% |################################################################################################| Time: 0:00:00 23.23 MB/s
sqlite-3.25.2- 100% |################################################################################################| Time: 0:00:00 24.03 MB/s
python-2.7.15- 100% |################################################################################################| Time: 0:00:00 20.71 MB/s
asn1crypto-0.2 100% |################################################################################################| Time: 0:00:00 22.67 MB/s
avro-1.8.0-py2 100% |################################################################################################| Time: 0:00:00 20.73 MB/s
certifi-2018.8 100% |################################################################################################| Time: 0:00:00 22.51 MB/s
chardet-3.0.4- 100% |################################################################################################| Time: 0:00:00 22.39 MB/s
cryptography-v 100% |################################################################################################| Time: 0:00:01 22.15 MB/s
cython-0.28.5- 100% |################################################################################################| Time: 0:00:00 23.39 MB/s
decorator-4.3. 100% |################################################################################################| Time: 0:00:00 11.02 MB/s
enum34-1.1.6-p 100% |################################################################################################| Time: 0:00:00 19.87 MB/s
future-0.16.0- 100% |################################################################################################| Time: 0:00:00 23.69 MB/s
idna-2.7-py27_ 100% |################################################################################################| Time: 0:00:00 21.70 MB/s
ipaddress-1.0. 100% |################################################################################################| Time: 0:00:00 13.24 MB/s
iso8601-0.1.12 100% |################################################################################################| Time: 0:00:00 10.62 MB/s
linecache2-1.0 100% |################################################################################################| Time: 0:00:00 12.07 MB/s
numpy-1.13.1-p 100% |################################################################################################| Time: 0:00:00 24.33 MB/s
pycparser-2.19 100% |################################################################################################| Time: 0:00:00 18.60 MB/s
pysocks-1.6.8- 100% |################################################################################################| Time: 0:00:00 7.09 MB/s
python-edlib-1 100% |################################################################################################| Time: 0:00:00 21.74 MB/s
python-msgpack 100% |################################################################################################| Time: 0:00:00 22.59 MB/s
python-sortedc 100% |################################################################################################| Time: 0:00:00 13.18 MB/s
pytz-2018.5-py 100% |################################################################################################| Time: 0:00:00 22.15 MB/s
six-1.11.0-py2 100% |################################################################################################| Time: 0:00:00 14.04 MB/s
bcftools-1.9-h 100% |################################################################################################| Time: 0:00:00 22.94 MB/s
cffi-1.11.5-py 100% |################################################################################################| Time: 0:00:00 22.36 MB/s
htslib-1.7-0.t 100% |################################################################################################| Time: 0:00:00 23.20 MB/s
python-consens 100% |################################################################################################| Time: 0:00:00 21.20 MB/s
python-consens 100% |################################################################################################| Time: 0:00:00 23.70 MB/s
python-interva 100% |################################################################################################| Time: 0:00:00 6.24 MB/s
setuptools-40. 100% |################################################################################################| Time: 0:00:00 23.17 MB/s
traceback2-1.4 100% |################################################################################################| Time: 0:00:00 15.98 MB/s
cryptography-2 100% |################################################################################################| Time: 0:00:00 21.84 MB/s
networkx-2.2-p 100% |################################################################################################| Time: 0:00:00 22.74 MB/s
pbbam-0.18.0-h 100% |################################################################################################| Time: 0:00:00 22.97 MB/s
pysam-0.14.1-p 100% |################################################################################################| Time: 0:00:00 21.39 MB/s
unittest2-1.1. 100% |################################################################################################| Time: 0:00:00 19.96 MB/s
wheel-0.32.1-p 100% |################################################################################################| Time: 0:00:00 16.93 MB/s
blasr_libcpp-5 100% |################################################################################################| Time: 0:00:00 20.38 MB/s
h5py-2.8.0-py2 100% |################################################################################################| Time: 0:00:00 21.87 MB/s
pb-falcon-0.2. 100% |################################################################################################| Time: 0:00:00 23.30 MB/s
pip-18.1-py27_ 100% |################################################################################################| Time: 0:00:00 23.75 MB/s
pyopenssl-18.0 100% |################################################################################################| Time: 0:00:00 21.84 MB/s
blasr-5.3.2-ha 100% |################################################################################################| Time: 0:00:00 22.51 MB/s
pbcore-1.5.1-p 100% |################################################################################################| Time: 0:00:00 21.71 MB/s
urllib3-1.23-p 100% |################################################################################################| Time: 0:00:00 22.18 MB/s
requests-2.19. 100% |################################################################################################| Time: 0:00:00 21.90 MB/s
pbcommand-1.1. 100% |################################################################################################| Time: 0:00:00 21.83 MB/s
genomicconsens 100% |################################################################################################| Time: 0:00:00 21.17 MB/s
pbalign-0.3.1- 100% |################################################################################################| Time: 0:00:00 21.06 MB/s
pb-assembly-0. 100% |################################################################################################| Time: 0:00:00 4.73 MB/s
##############################################################################
# #
# PacBio(R) tools distributed via Bioconda are: pre-release versions, not #
# necessarily ISO compliant, intended for Research Use Only and not for use #
# in diagnostic procedures, intended only for command-line users, and #
# possibly newer than the currently available SMRT(R) Analysis builds. While #
# efforts have been made to ensure that releases on Bioconda live up to the #
# quality that PacBio strives for, we make no warranty regarding any #
# Bioconda release. #
# #
# As PacBio tools distributed via Bioconda are not covered by any service #
# level agreement or the like, please *do not* contact a PacBio Field #
# Applications Scientist or PacBio Customer Service for assistance with any #
# Bioconda release. We instead provide an issue tracker for you to report #
# issues to us at: #
# #
# https://github.com/PacificBiosciences/pbbioconda #
# #
# We make no warranty that any such issue will be addressed, #
# to any extent or within any time frame. #
# #
# BSD 3-Clause Clear License #
# #
# Please see https://github.com/PacificBiosciences/pbbioconda for #
# information on License, Copyright and Disclaimer #
# #
##############################################################################
##############################################################################
# #
# PacBio(R) tools distributed via Bioconda are: pre-release versions, not #
# necessarily ISO compliant, intended for Research Use Only and not for use #
# in diagnostic procedures, intended only for command-line users, and #
# possibly newer than the currently available SMRT(R) Analysis builds. While #
# efforts have been made to ensure that releases on Bioconda live up to the #
# quality that PacBio strives for, we make no warranty regarding any #
# Bioconda release. #
# #
# As PacBio tools distributed via Bioconda are not covered by any service #
# level agreement or the like, please *do not* contact a PacBio Field #
# Applications Scientist or PacBio Customer Service for assistance with any #
# Bioconda release. We instead provide an issue tracker for you to report #
# issues to us at: #
# #
# https://github.com/PacificBiosciences/pbbioconda #
# #
# We make no warranty that any such issue will be addressed, #
# to any extent or within any time frame. #
# #
# BSD 3-Clause Clear License #
# #
# Please see https://github.com/PacificBiosciences/pbbioconda for #
# information on License, Copyright and Disclaimer #
# #
##############################################################################
##############################################################################
# #
# PacBio(R) tools distributed via Bioconda are: pre-release versions, not #
# necessarily ISO compliant, intended for Research Use Only and not for use #
# in diagnostic procedures, intended only for command-line users, and #
# possibly newer than the currently available SMRT(R) Analysis builds. While #
# efforts have been made to ensure that releases on Bioconda live up to the #
# quality that PacBio strives for, we make no warranty regarding any #
# Bioconda release. #
# #
# As PacBio tools distributed via Bioconda are not covered by any service #
# level agreement or the like, please *do not* contact a PacBio Field #
# Applications Scientist or PacBio Customer Service for assistance with any #
# Bioconda release. We instead provide an issue tracker for you to report #
# issues to us at: #
# #
# https://github.com/PacificBiosciences/pbbioconda #
# #
# We make no warranty that any such issue will be addressed, #
# to any extent or within any time frame. #
# #
# BSD 3-Clause Clear License #
# #
# Please see https://github.com/PacificBiosciences/pbbioconda for #
# information on License, Copyright and Disclaimer #
# #
##############################################################################
##############################################################################
# #
# PacBio(R) tools distributed via Bioconda are: pre-release versions, not #
# necessarily ISO compliant, intended for Research Use Only and not for use #
# in diagnostic procedures, intended only for command-line users, and #
# possibly newer than the currently available SMRT(R) Analysis builds. While #
# efforts have been made to ensure that releases on Bioconda live up to the #
# quality that PacBio strives for, we make no warranty regarding any #
# Bioconda release. #
# #
# As PacBio tools distributed via Bioconda are not covered by any service #
# level agreement or the like, please *do not* contact a PacBio Field #
# Applications Scientist or PacBio Customer Service for assistance with any #
# Bioconda release. We instead provide an issue tracker for you to report #
# issues to us at: #
# #
# https://github.com/PacificBiosciences/pbbioconda #
# #
# We make no warranty that any such issue will be addressed, #
# to any extent or within any time frame. #
# #
# BSD 3-Clause Clear License #
# #
# Please see https://github.com/PacificBiosciences/pbbioconda for #
# information on License, Copyright and Disclaimer #
# #
##############################################################################
##############################################################################
# #
# PacBio(R) tools distributed via Bioconda are: pre-release versions, not #
# necessarily ISO compliant, intended for Research Use Only and not for use #
# in diagnostic procedures, intended only for command-line users, and #
# possibly newer than the currently available SMRT(R) Analysis builds. While #
# efforts have been made to ensure that releases on Bioconda live up to the #
# quality that PacBio strives for, we make no warranty regarding any #
# Bioconda release. #
# #
# As PacBio tools distributed via Bioconda are not covered by any service #
# level agreement or the like, please *do not* contact a PacBio Field #
# Applications Scientist or PacBio Customer Service for assistance with any #
# Bioconda release. We instead provide an issue tracker for you to report #
# issues to us at: #
# #
# https://github.com/PacificBiosciences/pbbioconda #
# #
# We make no warranty that any such issue will be addressed, #
# to any extent or within any time frame. #
# #
# BSD 3-Clause Clear License #
# #
# Please see https://github.com/PacificBiosciences/pbbioconda for #
# information on License, Copyright and Disclaimer #
# #
##############################################################################
(denovo_asm) [jnarayan@hmem00 ~]$ conda list
# packages in environment at /home/unamur/URBE/jnarayan/.conda/envs/denovo_asm:
#
asn1crypto 0.24.0 py27_1003 conda-forge
avro 1.8.0 py27_0 bioconda
bcftools 1.9 h4da6232_0 bioconda
bedtools 2.27.1 he941832_2 bioconda
blas 1.0 mkl
blasr 5.3.2 hac9d22c_3 bioconda
blasr_libcpp 5.3.1 hac9d22c_2 bioconda
bwa 0.7.17 ha92aebf_3 bioconda
bzip2 1.0.6 h470a237_2 conda-forge
ca-certificates 2018.8.24 ha4d7672_0 conda-forge
certifi 2018.8.24 py27_1001 conda-forge
cffi 1.11.5 py27h5e8e0c9_1 conda-forge
chardet 3.0.4 py27_1003 conda-forge
cryptography 2.3.1 py27hdffb7b8_0 conda-forge
cryptography-vectors 2.3.1 py27_1000 conda-forge
curl 7.61.1 h74213dd_2 conda-forge
cython 0.28.5 py27hfc679d8_0 conda-forge
decorator 4.3.0 py_0 conda-forge
enum34 1.1.6 py27_1001 conda-forge
future 0.16.0 py27_1002 conda-forge
genomicconsensus 2.3.2 py27_1 bioconda
h5py 2.8.0 py27h7eb728f_3 conda-forge
hdf5 1.10.2 hc401514_2 conda-forge
htslib 1.7 0 bioconda
idna 2.7 py27_1002 conda-forge
ipaddress 1.0.22 py_1 conda-forge
iso8601 0.1.12 py_1 conda-forge
krb5 1.16.1 hbb41f41_0 conda-forge
libcurl 7.61.1 hbdb9355_2 conda-forge
libdeflate 1.0 h470a237_0 bioconda
libedit 3.1.20170329 haf1bffa_1 conda-forge
libffi 3.2.1 hfc679d8_5 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-ng 7.2.0 hdf63c60_3 conda-forge
libgfortran 3.0.0 1 conda-forge
libssh2 1.8.0 h5b517e9_2 conda-forge
libstdcxx-ng 7.2.0 hdf63c60_3 conda-forge
linecache2 1.0.0 py_1 conda-forge
minimap2 2.12 ha92aebf_0 bioconda
mkl 2017.0.3 0
mummer4 4.0.0beta2 pl526hfc679d8_3 bioconda
ncurses 6.1 hfc679d8_1 conda-forge
networkx 2.2 py_1 conda-forge
nim-falcon 0.0.0 0 bioconda
numpy 1.13.1 py27_0
openssl 1.0.2p h470a237_0 conda-forge
pb-assembly 0.0.1 py27_0 bioconda
pb-dazzler 0.0.0 h470a237_0 bioconda
pb-falcon 0.2.4 py27ha92aebf_0 bioconda
pbalign 0.3.1 py27_0 bioconda
pbbam 0.18.0 h1310cd9_1 bioconda
pbcommand 1.1.1 py27h24bf2e0_1 bioconda
pbcore 1.5.1 py27_1 bioconda
perl 5.26.2 h470a237_0 conda-forge
pip 18.1 py27_1000 conda-forge
pycparser 2.19 py_0 conda-forge
pyopenssl 18.0.0 py27_1000 conda-forge
pysam 0.14.1 py27hae42fb6_1 bioconda
pysocks 1.6.8 py27_1002 conda-forge
python 2.7.15 h33da82c_1 conda-forge
python-consensuscore 1.1.1 py27h02d93b8_1 bioconda
python-consensuscore2 3.1.0 py27_1 bioconda
python-edlib 1.2.3 py27h470a237_1 bioconda
python-intervaltree 2.1.0 py_0 bioconda
python-msgpack 0.5.6 py27h470a237_0 bioconda
python-sortedcontainers 2.0.4 py_0 bioconda
pytz 2018.5 py_0 conda-forge
readline 7.0 haf1bffa_1 conda-forge
requests 2.19.1 py27_1 conda-forge
samtools 1.9 h8ee4bcc_1 bioconda
setuptools 40.4.3 py27_0 conda-forge
six 1.11.0 py27_1001 conda-forge
sqlite 3.25.2 hb1c47c0_0 conda-forge
tk 8.6.8 ha92aebf_0 conda-forge
traceback2 1.4.0 py27_0 conda-forge
unittest2 1.1.0 py_0 conda-forge
urllib3 1.23 py27_1 conda-forge
wheel 0.32.1 py27_0 conda-forge
xz 5.2.4 h470a237_1 conda-forge
zlib 1.2.11 h470a237_3 conda-forge
(denovo_asm) [jnarayan@hmem00 ~]$ fc
fc fc_emit_haplotigs.py fc_ovlp_stats fc_rr_hctg_track.exe
fc_actg_coordinate fc_fasta2fasta fc_ovlp_to_graph fc_rr_hctg_track.py
fcaps fc_fetch_reads fc-pattern fc_run
fc-cache fc_filt_hp.py fc_phased_ovlp_to_graph.py fc_run1
fc_calc_cutoff fc_gen_gfa_v1 fc_phase.py fc_run.py
fc-cat fc_get_read_ctg_map fc_phasing_readmap.py fc-scan
fc_consensus fc_get_read_hctg_map.py fc_pr_ctg_track fc_scrub_names.pl
fc_consensus.exe fc_graph_to_contig fc_primary_contig_index.pl fc_select_reads_from_bam.py
fc_contig_annotate fc_graph_to_utgs fc-query fc_unzip_gen_gfa_v1.py
fc_coords2hp.py fc-list fc_quiver.py fc_unzip.py
fc_ctg_link_analysis fc-match fc_rr_ctg_track fc-validate
fc_dedup_a_t
