Rahul Nayak
A Bioinformatician
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One liner for reads mapping !
By Rahul Nayak 2065 days ago
bwa aln -t 8 targetGenome.fa reads.fastq | bwa samse targetGenome.fa - reads.fastq\
| samtools view -bt targetGenome.fa - | samtools sort - reads.bwa.targetGenome
samtools index reads.bwa.targetGenome.bam
