Rahul Nayak
A Bioinformatician
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Bash commandline to install Anaconda !
By Rahul Nayak 1547 days ago
#The line begins with $ are the commands
$ mkdir tmp
$ cd tmp/
$ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 654M 100 654M 0 0 940k 0 0:11:52 0:11:52 --:--:-- 2059k
$ sha256sum Anaconda3-2019.03-Linux-x86_64.sh
45c851b7497cc14d5ca060064394569f724b67d9b5f98a926ed49b834a6bb73a Anaconda3-2019.03-Linux-x86_64.sh
$ bash Anaconda3-2019.03-Linux-x86_64.sh
In order to continue the installation process, please review the license
agreement.
Please, press ENTER to continue
>>>
===================================
Anaconda End User License Agreement
===================================
......
......
......
Do you accept the license terms? [yes|no]
Please answer 'yes' or 'no':'
>>> yes
Anaconda3 will now be installed into this location:
/data/sata_data/workshop/wsu29/anaconda3
- Press ENTER to confirm the location
- Press CTRL-C to abort the installation
- Or specify a different location below
[/data/sata_data/workshop/wsu29/anaconda3] >>>
PREFIX=/data/sata_data/workshop/wsu29/anaconda3
installing: python-3.7.3-h0371630_0 ...
Python 3.7.3
installing: conda-env-2.6.0-1 ...
installing: blas-1.0-mkl ...
installing: ca-certificates-2019.1.23-0 ...
installing: intel-openmp-2019.3-199 ...
installing: libgcc-ng-8.2.0-hdf63c60_1 ...
installing: libgfortran-ng-7.3.0-hdf63c60_0 ...
installing: libstdcxx-ng-8.2.0-hdf63c60_1 ...
installing: bzip2-1.0.6-h14c3975_5 ...
installing: expat-2.2.6-he6710b0_0 ...
installing: fribidi-1.0.5-h7b6447c_0 ...
installing: gmp-6.1.2-h6c8ec71_1 ...
installing: graphite2-1.3.13-h23475e2_0 ...
installing: icu-58.2-h9c2bf20_1 ...
installing: jbig-2.1-hdba287a_0 ...
installing: jpeg-9b-h024ee3a_2 ...
installing: libffi-3.2.1-hd88cf55_4 ...
installing: liblief-0.9.0-h7725739_2 ...
installing: libsodium-1.0.16-h1bed415_0 ...
installing: libtool-2.4.6-h7b6447c_5 ...
installing: libuuid-1.0.3-h1bed415_2 ...
installing: libxcb-1.13-h1bed415_1 ...
installing: lz4-c-1.8.1.2-h14c3975_0 ...
installing: lzo-2.10-h49e0be7_2 ...
installing: mkl-2019.3-199 ...
installing: ncurses-6.1-he6710b0_1 ...
installing: openssl-1.1.1b-h7b6447c_1 ...
installing: patchelf-0.9-he6710b0_3 ...
installing: pcre-8.43-he6710b0_0 ...
installing: pixman-0.38.0-h7b6447c_0 ...
installing: snappy-1.1.7-hbae5bb6_3 ...
installing: xz-5.2.4-h14c3975_4 ...
installing: yaml-0.1.7-had09818_2 ...
installing: zlib-1.2.11-h7b6447c_3 ...
installing: blosc-1.15.0-hd408876_0 ...
installing: glib-2.56.2-hd408876_0 ...
installing: hdf5-1.10.4-hb1b8bf9_0 ...
installing: libedit-3.1.20181209-hc058e9b_0 ...
installing: libpng-1.6.36-hbc83047_0 ...
installing: libssh2-1.8.0-h1ba5d50_4 ...
installing: libxml2-2.9.9-he19cac6_0 ...
installing: mpfr-4.0.1-hdf1c602_3 ...
installing: pandoc-2.2.3.2-0 ...
installing: readline-7.0-h7b6447c_5 ...
installing: tk-8.6.8-hbc83047_0 ...
installing: zeromq-4.3.1-he6710b0_3 ...
installing: zstd-1.3.7-h0b5b093_0 ...
installing: dbus-1.13.6-h746ee38_0 ...
installing: freetype-2.9.1-h8a8886c_1 ...
installing: gstreamer-1.14.0-hb453b48_1 ...
installing: krb5-1.16.1-h173b8e3_7 ...
installing: libarchive-3.3.3-h5d8350f_5 ...
installing: libtiff-4.0.10-h2733197_2 ...
installing: libxslt-1.1.33-h7d1a2b0_0 ...
installing: mpc-1.1.0-h10f8cd9_1 ...
installing: sqlite-3.27.2-h7b6447c_0 ...
installing: unixodbc-2.3.7-h14c3975_0 ...
installing: fontconfig-2.13.0-h9420a91_0 ...
installing: gst-plugins-base-1.14.0-hbbd80ab_1 ...
installing: libcurl-7.64.0-h20c2e04_2 ...
installing: alabaster-0.7.12-py37_0 ...
installing: asn1crypto-0.24.0-py37_0 ...
installing: atomicwrites-1.3.0-py37_1 ...
installing: attrs-19.1.0-py37_1 ...
installing: backcall-0.1.0-py37_0 ...
installing: backports-1.0-py37_1 ...
installing: bitarray-0.8.3-py37h14c3975_0 ...
installing: boto-2.49.0-py37_0 ...
installing: cairo-1.14.12-h8948797_3 ...
installing: certifi-2019.3.9-py37_0 ...
installing: chardet-3.0.4-py37_1 ...
installing: click-7.0-py37_0 ...
installing: cloudpickle-0.8.0-py37_0 ...
installing: colorama-0.4.1-py37_0 ...
installing: contextlib2-0.5.5-py37_0 ...
installing: curl-7.64.0-hbc83047_2 ...
installing: dask-core-1.1.4-py37_1 ...
installing: decorator-4.4.0-py37_1 ...
installing: defusedxml-0.5.0-py37_1 ...
installing: docutils-0.14-py37_0 ...
installing: entrypoints-0.3-py37_0 ...
installing: et_xmlfile-1.0.1-py37_0 ...
installing: fastcache-1.0.2-py37h14c3975_2 ...
installing: filelock-3.0.10-py37_0 ...
installing: future-0.17.1-py37_0 ...
installing: glob2-0.6-py37_1 ...
installing: gmpy2-2.0.8-py37h10f8cd9_2 ...
installing: greenlet-0.4.15-py37h7b6447c_0 ...
installing: heapdict-1.0.0-py37_2 ...
installing: idna-2.8-py37_0 ...
installing: imagesize-1.1.0-py37_0 ...
installing: ipython_genutils-0.2.0-py37_0 ...
installing: itsdangerous-1.1.0-py37_0 ...
installing: jdcal-1.4-py37_0 ...
installing: jeepney-0.4-py37_0 ...
installing: kiwisolver-1.0.1-py37hf484d3e_0 ...
installing: lazy-object-proxy-1.3.1-py37h14c3975_2 ...
installing: llvmlite-0.28.0-py37hd408876_0 ...
installing: locket-0.2.0-py37_1 ...
installing: lxml-4.3.2-py37hefd8a0e_0 ...
installing: markupsafe-1.1.1-py37h7b6447c_0 ...
installing: mccabe-0.6.1-py37_1 ...
installing: mistune-0.8.4-py37h7b6447c_0 ...
installing: mkl-service-1.1.2-py37he904b0f_5 ...
installing: more-itertools-6.0.0-py37_0 ...
installing: mpmath-1.1.0-py37_0 ...
installing: msgpack-python-0.6.1-py37hfd86e86_1 ...
installing: numpy-base-1.16.2-py37hde5b4d6_0 ...
installing: olefile-0.46-py37_0 ...
installing: pandocfilters-1.4.2-py37_1 ...
installing: parso-0.3.4-py37_0 ...
installing: pep8-1.7.1-py37_0 ...
installing: pickleshare-0.7.5-py37_0 ...
installing: pkginfo-1.5.0.1-py37_0 ...
installing: pluggy-0.9.0-py37_0 ...
installing: ply-3.11-py37_0 ...
installing: prometheus_client-0.6.0-py37_0 ...
installing: psutil-5.6.1-py37h7b6447c_0 ...
installing: ptyprocess-0.6.0-py37_0 ...
installing: py-1.8.0-py37_0 ...
installing: py-lief-0.9.0-py37h7725739_2 ...
installing: pycodestyle-2.5.0-py37_0 ...
installing: pycosat-0.6.3-py37h14c3975_0 ...
installing: pycparser-2.19-py37_0 ...
installing: pycrypto-2.6.1-py37h14c3975_9 ...
installing: pycurl-7.43.0.2-py37h1ba5d50_0 ...
installing: pyflakes-2.1.1-py37_0 ...
installing: pyodbc-4.0.26-py37he6710b0_0 ...
installing: pyparsing-2.3.1-py37_0 ...
installing: pysocks-1.6.8-py37_0 ...
installing: python-libarchive-c-2.8-py37_6 ...
installing: pytz-2018.9-py37_0 ...
installing: pyyaml-5.1-py37h7b6447c_0 ...
installing: pyzmq-18.0.0-py37he6710b0_0 ...
installing: qt-5.9.7-h5867ecd_1 ...
installing: qtpy-1.7.0-py37_1 ...
installing: rope-0.12.0-py37_0 ...
installing: ruamel_yaml-0.15.46-py37h14c3975_0 ...
installing: send2trash-1.5.0-py37_0 ...
installing: simplegeneric-0.8.1-py37_2 ...
installing: sip-4.19.8-py37hf484d3e_0 ...
installing: six-1.12.0-py37_0 ...
installing: snowballstemmer-1.2.1-py37_0 ...
installing: sortedcontainers-2.1.0-py37_0 ...
installing: soupsieve-1.8-py37_0 ...
installing: sphinxcontrib-1.0-py37_1 ...
installing: sqlalchemy-1.3.1-py37h7b6447c_0 ...
installing: tblib-1.3.2-py37_0 ...
installing: testpath-0.4.2-py37_0 ...
installing: toolz-0.9.0-py37_0 ...
installing: tornado-6.0.2-py37h7b6447c_0 ...
installing: tqdm-4.31.1-py37_1 ...
installing: unicodecsv-0.14.1-py37_0 ...
installing: wcwidth-0.1.7-py37_0 ...
installing: webencodings-0.5.1-py37_1 ...
installing: werkzeug-0.14.1-py37_0 ...
installing: wrapt-1.11.1-py37h7b6447c_0 ...
installing: wurlitzer-1.0.2-py37_0 ...
installing: xlrd-1.2.0-py37_0 ...
installing: xlsxwriter-1.1.5-py37_0 ...
installing: xlwt-1.3.0-py37_0 ...
installing: zipp-0.3.3-py37_1 ...
installing: babel-2.6.0-py37_0 ...
installing: backports.os-0.1.1-py37_0 ...
installing: backports.shutil_get_terminal_size-1.0.0-py37_2 ...
installing: beautifulsoup4-4.7.1-py37_1 ...
installing: cffi-1.12.2-py37h2e261b9_1 ...
installing: cycler-0.10.0-py37_0 ...
installing: cytoolz-0.9.0.1-py37h14c3975_1 ...
installing: harfbuzz-1.8.8-hffaf4a1_0 ...
installing: html5lib-1.0.1-py37_0 ...
installing: importlib_metadata-0.8-py37_0 ...
installing: jedi-0.13.3-py37_0 ...
installing: mkl_random-1.0.2-py37hd81dba3_0 ...
installing: multipledispatch-0.6.0-py37_0 ...
installing: nltk-3.4-py37_1 ...
installing: openpyxl-2.6.1-py37_1 ...
installing: packaging-19.0-py37_0 ...
installing: partd-0.3.10-py37_1 ...
installing: pathlib2-2.3.3-py37_0 ...
installing: pexpect-4.6.0-py37_0 ...
installing: pillow-5.4.1-py37h34e0f95_0 ...
installing: pyqt-5.9.2-py37h05f1152_2 ...
installing: pyrsistent-0.14.11-py37h7b6447c_0 ...
installing: python-dateutil-2.8.0-py37_0 ...
installing: qtawesome-0.5.7-py37_1 ...
installing: setuptools-40.8.0-py37_0 ...
installing: singledispatch-3.4.0.3-py37_0 ...
installing: sortedcollections-1.1.2-py37_0 ...
installing: sphinxcontrib-websupport-1.1.0-py37_1 ...
installing: sympy-1.3-py37_0 ...
installing: terminado-0.8.1-py37_1 ...
installing: traitlets-4.3.2-py37_0 ...
installing: zict-0.1.4-py37_0 ...
installing: astroid-2.2.5-py37_0 ...
installing: bleach-3.1.0-py37_0 ...
installing: clyent-1.2.2-py37_1 ...
installing: cryptography-2.6.1-py37h1ba5d50_0 ...
installing: cython-0.29.6-py37he6710b0_0 ...
installing: distributed-1.26.0-py37_1 ...
installing: get_terminal_size-1.0.0-haa9412d_0 ...
installing: gevent-1.4.0-py37h7b6447c_0 ...
installing: isort-4.3.16-py37_0 ...
installing: jinja2-2.10-py37_0 ...
installing: jsonschema-3.0.1-py37_0 ...
installing: jupyter_core-4.4.0-py37_0 ...
installing: navigator-updater-0.2.1-py37_0 ...
installing: networkx-2.2-py37_1 ...
installing: nose-1.3.7-py37_2 ...
installing: pango-1.42.4-h049681c_0 ...
installing: path.py-11.5.0-py37_0 ...
installing: pygments-2.3.1-py37_0 ...
installing: pytest-4.3.1-py37_0 ...
installing: wheel-0.33.1-py37_0 ...
installing: conda-verify-3.1.1-py37_0 ...
installing: flask-1.0.2-py37_1 ...
installing: jupyter_client-5.2.4-py37_0 ...
installing: nbformat-4.4.0-py37_0 ...
installing: pip-19.0.3-py37_0 ...
installing: prompt_toolkit-2.0.9-py37_0 ...
installing: pylint-2.3.1-py37_0 ...
installing: pyopenssl-19.0.0-py37_0 ...
installing: pytest-openfiles-0.3.2-py37_0 ...
installing: pytest-remotedata-0.3.1-py37_0 ...
installing: secretstorage-3.1.1-py37_0 ...
installing: ipython-7.4.0-py37h39e3cac_0 ...
installing: keyring-18.0.0-py37_0 ...
installing: nbconvert-5.4.1-py37_3 ...
installing: urllib3-1.24.1-py37_0 ...
installing: ipykernel-5.1.0-py37h39e3cac_0 ...
installing: requests-2.21.0-py37_0 ...
installing: anaconda-client-1.7.2-py37_0 ...
installing: conda-4.6.11-py37_0 ...
installing: jupyter_console-6.0.0-py37_0 ...
installing: notebook-5.7.8-py37_0 ...
installing: qtconsole-4.4.3-py37_0 ...
installing: sphinx-1.8.5-py37_0 ...
installing: spyder-kernels-0.4.2-py37_0 ...
installing: anaconda-navigator-1.9.7-py37_0 ...
installing: anaconda-project-0.8.2-py37_0 ...
installing: conda-build-3.17.8-py37_0 ...
installing: jupyterlab_server-0.2.0-py37_0 ...
installing: numpydoc-0.8.0-py37_0 ...
installing: widgetsnbextension-3.4.2-py37_0 ...
installing: ipywidgets-7.4.2-py37_0 ...
installing: jupyterlab-0.35.4-py37hf63ae98_0 ...
installing: spyder-3.3.3-py37_0 ...
installing: _ipyw_jlab_nb_ext_conf-0.1.0-py37_0 ...
installing: jupyter-1.0.0-py37_7 ...
installing: bokeh-1.0.4-py37_0 ...
installing: bottleneck-1.2.1-py37h035aef0_1 ...
installing: h5py-2.9.0-py37h7918eee_0 ...
installing: imageio-2.5.0-py37_0 ...
installing: matplotlib-3.0.3-py37h5429711_0 ...
installing: mkl_fft-1.0.10-py37ha843d7b_0 ...
installing: numpy-1.16.2-py37h7e9f1db_0 ...
installing: numba-0.43.1-py37h962f231_0 ...
installing: numexpr-2.6.9-py37h9e4a6bb_0 ...
installing: pandas-0.24.2-py37he6710b0_0 ...
installing: pytest-arraydiff-0.3-py37h39e3cac_0 ...
installing: pytest-doctestplus-0.3.0-py37_0 ...
installing: pywavelets-1.0.2-py37hdd07704_0 ...
installing: scipy-1.2.1-py37h7c811a0_0 ...
installing: bkcharts-0.2-py37_0 ...
installing: dask-1.1.4-py37_1 ...
installing: patsy-0.5.1-py37_0 ...
installing: pytables-3.5.1-py37h71ec239_0 ...
installing: pytest-astropy-0.5.0-py37_0 ...
installing: scikit-image-0.14.2-py37he6710b0_0 ...
installing: scikit-learn-0.20.3-py37hd81dba3_0 ...
installing: astropy-3.1.2-py37h7b6447c_0 ...
installing: statsmodels-0.9.0-py37h035aef0_0 ...
installing: seaborn-0.9.0-py37_0 ...
installing: anaconda-2019.03-py37_0 ...
installation finished.
Do you wish the installer to initialize Anaconda3
by running conda init? [yes|no]
[no] >>> yes
WARNING: The conda.compat module is deprecated and will be removed in a future release.
no change /data/sata_data/workshop/wsu29/anaconda3/condabin/conda
no change /data/sata_data/workshop/wsu29/anaconda3/bin/conda
no change /data/sata_data/workshop/wsu29/anaconda3/bin/conda-env
no change /data/sata_data/workshop/wsu29/anaconda3/bin/activate
no change /data/sata_data/workshop/wsu29/anaconda3/bin/deactivate
no change /data/sata_data/workshop/wsu29/anaconda3/etc/profile.d/conda.sh
no change /data/sata_data/workshop/wsu29/anaconda3/etc/fish/conf.d/conda.fish
no change /data/sata_data/workshop/wsu29/anaconda3/shell/condabin/Conda.psm1
no change /data/sata_data/workshop/wsu29/anaconda3/shell/condabin/conda-hook.ps1
no change /data/sata_data/workshop/wsu29/anaconda3/lib/python3.7/site-packages/xonsh/conda.xsh
no change /data/sata_data/workshop/wsu29/anaconda3/etc/profile.d/conda.csh
modified /data/sata_data/workshop/wsu29/.bashrc
==> For changes to take effect, close and re-open your current shell. <==
If you'd prefer that conda's base environment not be activated on startup,
set the auto_activate_base parameter to false:
conda config --set auto_activate_base false
Thank you for installing Anaconda3!
===========================================================================
Anaconda and JetBrains are working together to bring you Anaconda-powered
environments tightly integrated in the PyCharm IDE.
PyCharm for Anaconda is available at:
https://www.anaconda.com/pycharm
#Ativate now
$ source ~/.bashrc
#Check/Test
$ conda list
# Python 3 environment named my_env can be created with the following command:
$ conda create --name my_env python=3
#Activate env
$ conda activate my_env
#To update conda
$ conda update -n base -c defaults conda
