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Installing docker for Bioinformatics on Ubuntu !

  • Public
By Jit 1750 days ago
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io containerd runc Reading package lists... Done Building dependency tree Reading state information... Done Package 'docker-engine' is not installed, so not removed Package 'docker' is not installed, so not removed Package 'containerd' is not installed, so not removed Package 'docker.io' is not installed, so not removed Package 'runc' is not installed, so not removed 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. jit@jit-HP-Pro-3335-MT:~/Downloads$ curl -fsSL https://get.docker.com -o get-docker.sh jit@jit-HP-Pro-3335-MT:~/Downloads$ chmod 777 get-docker.sh jit@jit-HP-Pro-3335-MT:~/Downloads$ ./get-docker.sh # Executing docker install script, commit: 442e66405c304fa92af8aadaa1d9b31bf4b0ad94 + sudo -E sh -c apt-get update -qq >/dev/null + sudo -E sh -c DEBIAN_FRONTEND=noninteractive apt-get install -y -qq apt-transport-https ca-certificates curl >/dev/null + sudo -E sh -c curl -fsSL "https://download.docker.com/linux/ubuntu/gpg" | apt-key add -qq - >/dev/null Warning: apt-key output should not be parsed (stdout is not a terminal) + sudo -E sh -c echo "deb [arch=amd64] https://download.docker.com/linux/ubuntu bionic stable" > /etc/apt/sources.list.d/docker.list + sudo -E sh -c apt-get update -qq >/dev/null + [ -n ] + sudo -E sh -c apt-get install -y -qq --no-install-recommends docker-ce >/dev/null + sudo -E sh -c docker version Client: Docker Engine - Community Version: 19.03.8 API version: 1.40 Go version: go1.12.17 Git commit: afacb8b7f0 Built: Wed Mar 11 01:25:46 2020 OS/Arch: linux/amd64 Experimental: false Server: Docker Engine - Community Engine: Version: 19.03.8 API version: 1.40 (minimum version 1.12) Go version: go1.12.17 Git commit: afacb8b7f0 Built: Wed Mar 11 01:24:19 2020 OS/Arch: linux/amd64 Experimental: false containerd: Version: 1.2.13 GitCommit: 7ad184331fa3e55e52b890ea95e65ba581ae3429 runc: Version: 1.0.0-rc10 GitCommit: dc9208a3303feef5b3839f4323d9beb36df0a9dd docker-init: Version: 0.18.0 GitCommit: fec3683 If you would like to use Docker as a non-root user, you should now consider adding your user to the "docker" group with something like: sudo usermod -aG docker jit Remember that you will have to log out and back in for this to take effect! WARNING: Adding a user to the "docker" group will grant the ability to run containers which can be used to obtain root privileges on the docker host. Refer to https://docs.docker.com/engine/security/security/#docker-daemon-attack-surface for more information. jit@jit-HP-Pro-3335-MT:~/Downloads$ docker Usage: docker [OPTIONS] COMMAND A self-sufficient runtime for containers Options: --config string Location of client config files (default "/home/jit/.docker") -c, --context string Name of the context to use to connect to the daemon (overrides DOCKER_HOST env var and default context set with "docker context use") -D, --debug Enable debug mode -H, --host list Daemon socket(s) to connect to -l, --log-level string Set the logging level ("debug"|"info"|"warn"|"error"|"fatal") (default "info") --tls Use TLS; implied by --tlsverify --tlscacert string Trust certs signed only by this CA (default "/home/jit/.docker/ca.pem") --tlscert string Path to TLS certificate file (default "/home/jit/.docker/cert.pem") --tlskey string Path to TLS key file (default "/home/jit/.docker/key.pem") --tlsverify Use TLS and verify the remote -v, --version Print version information and quit Management Commands: builder Manage builds config Manage Docker configs container Manage containers context Manage contexts engine Manage the docker engine image Manage images network Manage networks node Manage Swarm nodes plugin Manage plugins secret Manage Docker secrets service Manage services stack Manage Docker stacks swarm Manage Swarm system Manage Docker trust Manage trust on Docker images volume Manage volumes Commands: attach Attach local standard input, output, and error streams to a running container build Build an image from a Dockerfile commit Create a new image from a container's changes cp Copy files/folders between a container and the local filesystem create Create a new container deploy Deploy a new stack or update an existing stack diff Inspect changes to files or directories on a container's filesystem events Get real time events from the server exec Run a command in a running container export Export a container's filesystem as a tar archive history Show the history of an image images List images import Import the contents from a tarball to create a filesystem image info Display system-wide information inspect Return low-level information on Docker objects kill Kill one or more running containers load Load an image from a tar archive or STDIN login Log in to a Docker registry logout Log out from a Docker registry logs Fetch the logs of a container pause Pause all processes within one or more containers port List port mappings or a specific mapping for the container ps List containers pull Pull an image or a repository from a registry push Push an image or a repository to a registry rename Rename a container restart Restart one or more containers rm Remove one or more containers rmi Remove one or more images run Run a command in a new container save Save one or more images to a tar archive (streamed to STDOUT by default) search Search the Docker Hub for images start Start one or more stopped containers stats Display a live stream of container(s) resource usage statistics stop Stop one or more running containers tag Create a tag TARGET_IMAGE that refers to SOURCE_IMAGE top Display the running processes of a container unpause Unpause all processes within one or more containers update Update configuration of one or more containers version Show the Docker version information wait Block until one or more containers stop, then print their exit codes Run 'docker COMMAND --help' for more information on a command.