Jit
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Installing docker for Bioinformatics on Ubuntu !
By Jit 1715 days ago
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io containerd runc
Reading package lists... Done
Building dependency tree
Reading state information... Done
Package 'docker-engine' is not installed, so not removed
Package 'docker' is not installed, so not removed
Package 'containerd' is not installed, so not removed
Package 'docker.io' is not installed, so not removed
Package 'runc' is not installed, so not removed
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
jit@jit-HP-Pro-3335-MT:~/Downloads$ curl -fsSL https://get.docker.com -o get-docker.sh
jit@jit-HP-Pro-3335-MT:~/Downloads$ chmod 777 get-docker.sh
jit@jit-HP-Pro-3335-MT:~/Downloads$ ./get-docker.sh
# Executing docker install script, commit: 442e66405c304fa92af8aadaa1d9b31bf4b0ad94
+ sudo -E sh -c apt-get update -qq >/dev/null
+ sudo -E sh -c DEBIAN_FRONTEND=noninteractive apt-get install -y -qq apt-transport-https ca-certificates curl >/dev/null
+ sudo -E sh -c curl -fsSL "https://download.docker.com/linux/ubuntu/gpg" | apt-key add -qq - >/dev/null
Warning: apt-key output should not be parsed (stdout is not a terminal)
+ sudo -E sh -c echo "deb [arch=amd64] https://download.docker.com/linux/ubuntu bionic stable" > /etc/apt/sources.list.d/docker.list
+ sudo -E sh -c apt-get update -qq >/dev/null
+ [ -n ]
+ sudo -E sh -c apt-get install -y -qq --no-install-recommends docker-ce >/dev/null
+ sudo -E sh -c docker version
Client: Docker Engine - Community
Version: 19.03.8
API version: 1.40
Go version: go1.12.17
Git commit: afacb8b7f0
Built: Wed Mar 11 01:25:46 2020
OS/Arch: linux/amd64
Experimental: false
Server: Docker Engine - Community
Engine:
Version: 19.03.8
API version: 1.40 (minimum version 1.12)
Go version: go1.12.17
Git commit: afacb8b7f0
Built: Wed Mar 11 01:24:19 2020
OS/Arch: linux/amd64
Experimental: false
containerd:
Version: 1.2.13
GitCommit: 7ad184331fa3e55e52b890ea95e65ba581ae3429
runc:
Version: 1.0.0-rc10
GitCommit: dc9208a3303feef5b3839f4323d9beb36df0a9dd
docker-init:
Version: 0.18.0
GitCommit: fec3683
If you would like to use Docker as a non-root user, you should now consider
adding your user to the "docker" group with something like:
sudo usermod -aG docker jit
Remember that you will have to log out and back in for this to take effect!
WARNING: Adding a user to the "docker" group will grant the ability to run
containers which can be used to obtain root privileges on the
docker host.
Refer to https://docs.docker.com/engine/security/security/#docker-daemon-attack-surface
for more information.
jit@jit-HP-Pro-3335-MT:~/Downloads$ docker
Usage: docker [OPTIONS] COMMAND
A self-sufficient runtime for containers
Options:
--config string Location of client config files (default "/home/jit/.docker")
-c, --context string Name of the context to use to connect to the daemon (overrides DOCKER_HOST env var and default context set with "docker context use")
-D, --debug Enable debug mode
-H, --host list Daemon socket(s) to connect to
-l, --log-level string Set the logging level ("debug"|"info"|"warn"|"error"|"fatal") (default "info")
--tls Use TLS; implied by --tlsverify
--tlscacert string Trust certs signed only by this CA (default "/home/jit/.docker/ca.pem")
--tlscert string Path to TLS certificate file (default "/home/jit/.docker/cert.pem")
--tlskey string Path to TLS key file (default "/home/jit/.docker/key.pem")
--tlsverify Use TLS and verify the remote
-v, --version Print version information and quit
Management Commands:
builder Manage builds
config Manage Docker configs
container Manage containers
context Manage contexts
engine Manage the docker engine
image Manage images
network Manage networks
node Manage Swarm nodes
plugin Manage plugins
secret Manage Docker secrets
service Manage services
stack Manage Docker stacks
swarm Manage Swarm
system Manage Docker
trust Manage trust on Docker images
volume Manage volumes
Commands:
attach Attach local standard input, output, and error streams to a running container
build Build an image from a Dockerfile
commit Create a new image from a container's changes
cp Copy files/folders between a container and the local filesystem
create Create a new container
deploy Deploy a new stack or update an existing stack
diff Inspect changes to files or directories on a container's filesystem
events Get real time events from the server
exec Run a command in a running container
export Export a container's filesystem as a tar archive
history Show the history of an image
images List images
import Import the contents from a tarball to create a filesystem image
info Display system-wide information
inspect Return low-level information on Docker objects
kill Kill one or more running containers
load Load an image from a tar archive or STDIN
login Log in to a Docker registry
logout Log out from a Docker registry
logs Fetch the logs of a container
pause Pause all processes within one or more containers
port List port mappings or a specific mapping for the container
ps List containers
pull Pull an image or a repository from a registry
push Push an image or a repository to a registry
rename Rename a container
restart Restart one or more containers
rm Remove one or more containers
rmi Remove one or more images
run Run a command in a new container
save Save one or more images to a tar archive (streamed to STDOUT by default)
search Search the Docker Hub for images
start Start one or more stopped containers
stats Display a live stream of container(s) resource usage statistics
stop Stop one or more running containers
tag Create a tag TARGET_IMAGE that refers to SOURCE_IMAGE
top Display the running processes of a container
unpause Unpause all processes within one or more containers
update Update configuration of one or more containers
version Show the Docker version information
wait Block until one or more containers stop, then print their exit codes
Run 'docker COMMAND --help' for more information on a command.
