#Follow steps to create your own executable ./web
jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following additional packages will be installed:
libgetopt-argvfile-perl libmodule-scandeps-perl libmodule-signature-perl libpar-dist-perl
libpar-perl
The following NEW packages will be installed:
libgetopt-argvfile-perl libmodule-scandeps-perl libmodule-signature-perl libpar-dist-perl
libpar-packer-perl libpar-perl
0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded.
Need to get 2,098 kB of archives.
After this operation, 5,989 kB of additional disk space will be used.
Do you want to continue? [Y/n] Y
Get:1 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libgetopt-argvfile-perl all 1.11-3 [26.4 kB]
Get:2 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libmodule-scandeps-perl all 1.24-1 [28.6 kB]
Get:3 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libmodule-signature-perl all 0.81-1 [22.9 kB]
Get:4 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libpar-dist-perl all 0.49-2 [22.4 kB]
Get:5 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libpar-perl all 1.015-1 [74.1 kB]
Get:6 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libpar-packer-perl amd64 1.041-2 [1,924 kB]
Fetched 2,098 kB in 3s (729 kB/s)
Selecting previously unselected package libgetopt-argvfile-perl.
(Reading database ... 193749 files and directories currently installed.)
Preparing to unpack .../0-libgetopt-argvfile-perl_1.11-3_all.deb ...
Unpacking libgetopt-argvfile-perl (1.11-3) ...
Selecting previously unselected package libmodule-scandeps-perl.
Preparing to unpack .../1-libmodule-scandeps-perl_1.24-1_all.deb ...
Unpacking libmodule-scandeps-perl (1.24-1) ...
Selecting previously unselected package libmodule-signature-perl.
Preparing to unpack .../2-libmodule-signature-perl_0.81-1_all.deb ...
Unpacking libmodule-signature-perl (0.81-1) ...
Selecting previously unselected package libpar-dist-perl.
Preparing to unpack .../3-libpar-dist-perl_0.49-2_all.deb ...
Unpacking libpar-dist-perl (0.49-2) ...
Selecting previously unselected package libpar-perl.
Preparing to unpack .../4-libpar-perl_1.015-1_all.deb ...
Unpacking libpar-perl (1.015-1) ...
Selecting previously unselected package libpar-packer-perl.
Preparing to unpack .../5-libpar-packer-perl_1.041-2_amd64.deb ...
Unpacking libpar-packer-perl (1.041-2) ...
Setting up libmodule-scandeps-perl (1.24-1) ...
Setting up libgetopt-argvfile-perl (1.11-3) ...
Setting up libpar-dist-perl (0.49-2) ...
Setting up libmodule-signature-perl (0.81-1) ...
Setting up libpar-perl (1.015-1) ...
Setting up libpar-packer-perl (1.041-2) ...
Processing triggers for man-db (2.8.3-2ubuntu0.1) ...
#you can find the test script web.pl at https://bioinformaticsonline.com/snippets/view/41440/perl-script-to-reads-and-extract-webpage-contents
jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ pp web.pl -o web web.pl
jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ ./web https://bioinformaticsonline.com
#It return this
Wide character in say at script/dumptest.pl line 13.
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<div class="elgg-image"><a href="https://bioinformaticsonline.com/file/view/40239/analyzing-codon-usage"><img src="https://bioinformaticsonline.com/mod/file/graphics/icons/pdf.gif" alt="analyzing codon usage" /></a></div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/file/view/40239/analyzing-codon-usage">analyzing codon usage</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/file/owner/neelam">Neelam Jha</a> <acronym title="7 November 2019 @ 8:31am">130 days ago</acronym> </div> <div class="clearfix">
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</div><div class="elgg-content">perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.</div></div>
</div></li><li id="elgg-object-39262" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><a href="https://bioinformaticsonline.com/file/view/39262/biotechnology-eligibility-test-bet-answer-set"><img src="https://bioinformaticsonline.com/mod/file/graphics/icons/pdf.gif" alt="Biotechnology Eligibility Test (BET) Answer set !" /></a></div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/file/view/39262/biotechnology-eligibility-test-bet-answer-set">Biotechnology Eligibility Test (BET) Answer set !</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/file/owner/abhimanyu">Abhimanyu Singh</a> <acronym title="17 April 2019 @ 4:57am">334 days ago</acronym> </div> <div class="clearfix">
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</div><div class="elgg-content">DBT-BET JRF 2019 Exam was held successfully on 14th April 2019. Official Question Paper & Answer key of DBT-BET 2019 Exam has been released.
The best part about the DBT-BET Exam is both the question paper & answer key is released...</div></div>
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</div><div class="elgg-content">DBT-BET JRF 2019 Exam was held successfully on 14th April 2019. Official Question Paper & Answer key of DBT-BET 2019 Exam has been released.
The best part about the DBT-BET Exam is both the question paper & answer key is released...</div></div>
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</div><div class="elgg-content">TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence...</div></div>
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<div class="elgg-image"><a href="https://bioinformaticsonline.com/groups/profile/29677/comparative-genomics"><img src="https://bioinformaticsonline.com/mod/groups/graphics/defaulttiny.gif" alt="Comparative Genomics !!" width="25" height="25"/></a></div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/groups/profile/29677/comparative-genomics">Comparative Genomics !!</a></h3><div class="elgg-subtext">This group is dedicated to Comparative genomics ... Dramatic results have emerged from the rapidly developing field of comparative genomics. Comparison of the fruit fly genome with the human genome reveals that about sixty percent of genes are conserved (Adams et al. 2000). That is, the two organisms appear to share a core set of genes. Researchers have also found that two-thirds of human genes known to be involved in cancer have counterparts in the fruit fly.</div></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/samfil"><span class="elgg-heading-basic">Samantha Filipów</span>@samfil</a></li></ul><a href="https://bioinformaticsonline.com/profile/samfil" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Samantha Filipów" title="Samantha Filipów" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1583751154&joindate=1583739836&guid=41368&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/master_noddy"><span class="elgg-heading-basic">Nalesh G Jadhav</span>@master_noddy</a></li></ul><a href="https://bioinformaticsonline.com/profile/master_noddy" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Nalesh G Jadhav" title="Nalesh G Jadhav" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1581919660&joindate=1581495078&guid=40998&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/Sanchari"><span class="elgg-heading-basic">Sanchari Sircar</span>@Sanchari</a></li></ul><a href="https://bioinformaticsonline.com/profile/Sanchari" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Sanchari Sircar" title="Sanchari Sircar" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1549089889&joindate=1548670006&guid=38810&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/biojoker"><span class="elgg-heading-basic">BioJoker</span>@biojoker</a></li></ul><a href="https://bioinformaticsonline.com/profile/biojoker" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="BioJoker" title="BioJoker" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1542980384&joindate=1541633749&guid=38157&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/Rooby19"><span class="elgg-heading-basic">Rooby Yadav</span>@Rooby19</a></li></ul><a href="https://bioinformaticsonline.com/profile/Rooby19" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Rooby Yadav" title="Rooby Yadav" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1531994210&joindate=1531816000&guid=37315&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/eliabrodsky"><span class="elgg-heading-basic">eliabrodsky</span>@eliabrodsky</a></li></ul><a href="https://bioinformaticsonline.com/profile/eliabrodsky" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="eliabrodsky" title="eliabrodsky" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1523297243&joindate=1522897705&guid=36098&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/tisimpson"><span class="elgg-heading-basic">Ian Simpson</span>@tisimpson</a></li></ul><a href="https://bioinformaticsonline.com/profile/tisimpson" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Ian Simpson" title="Ian Simpson" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1520348468&joindate=1519894008&guid=35786&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/biogeek"><span class="elgg-heading-basic">biogeek</span>@biogeek</a></li></ul><a href="https://bioinformaticsonline.com/profile/biogeek" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="biogeek" title="biogeek" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1514344563&joindate=1514338965&guid=34837&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/lege"><span class="elgg-heading-basic">LEGE</span>@lege</a></li></ul><a href="https://bioinformaticsonline.com/profile/lege" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="LEGE" title="LEGE" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1569119127&joindate=1510653128&guid=34302&size=small) no-repeat;"/></a></div>
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/sahabuddin"><span class="elgg-heading-basic">sahabuddin</span>@sahabuddin</a></li></ul><a href="https://bioinformaticsonline.com/profile/sahabuddin" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="sahabuddin" title="sahabuddin" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1498113580&joindate=1498111619&guid=33626&size=small) no-repeat;"/></a></div>
</li></ul>
</div></div><div class="elgg-module elgg-module-highlight elgg-module-featured" ><div class="elgg-head"><h3>Latest blog posts</h3></div><div class="elgg-body"><ul class="elgg-list elgg-list-entity"><li id="elgg-object-40953" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><div class="elgg-avatar elgg-avatar-tiny">
<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/jit.aber"><span class="elgg-heading-basic">Jit</span>@jit.aber</a></li></ul><a href="https://bioinformaticsonline.com/profile/jit.aber" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Jit" title="Jit" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1374102733&joindate=1373372964&guid=40&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/blog/view/40953/explore-taxdump-files">Explore taxdump files !</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/blog/owner/jit.aber">Jit</a> <acronym title="8 February 2020 @ 4:44am">37 days ago</acronym> </div> <div class="clearfix">
<ul class="elgg-tags">
<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=extract&search_type=tags" rel="tag">extract</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=taxdump&search_type=tags" rel="tag">taxdump</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=readme&search_type=tags" rel="tag">readme</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=taxonomy&search_type=tags" rel="tag">taxonomy</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=ncbi&search_type=tags" rel="tag">ncbi</a></li>
</ul>
</div><div class="elgg-content">This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/</div></div>
</div></li><li id="elgg-object-40768" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><div class="elgg-avatar elgg-avatar-tiny">
<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/raag"><span class="elgg-heading-basic">Rahul Agarwal</span>@raag</a></li></ul><a href="https://bioinformaticsonline.com/profile/raag" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Rahul Agarwal" title="Rahul Agarwal" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1373491328&joindate=1373489922&guid=128&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/blog/view/40768/linux-advantages">Linux advantages</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/blog/owner/raag">Rahul Agarwal</a> <acronym title="30 January 2020 @ 6:27am">46 days ago</acronym> </div> <div class="clearfix">
<ul class="elgg-tags">
<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=linux&search_type=tags" rel="tag">linux</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=windows&search_type=tags" rel="tag">windows</a></li>
</ul>
</div><div class="elgg-content">https://www.forbes.com/sites/jasonevangelho/2018/07/30/ditching-windows-heres-how-ubuntu-updates-your-pc-and-why-its-better/#7aa6fa5f7c23
https://www.forbes.com/sites/jasonevangelho/2018/07/23/5-reasons-you-should-switch-from-windows-to-linux-right-...</div></div>
</div></li><li id="elgg-object-40736" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><div class="elgg-avatar elgg-avatar-tiny">
<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/jit.aber"><span class="elgg-heading-basic">Jit</span>@jit.aber</a></li></ul><a href="https://bioinformaticsonline.com/profile/jit.aber" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Jit" title="Jit" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1374102733&joindate=1373372964&guid=40&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/blog/view/40736/list-of-perl-special-symbols">List of perl special symbols !</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/blog/owner/jit.aber">Jit</a> <acronym title="28 January 2020 @ 6:44am">48 days ago</acronym> </div> <div class="clearfix">
<ul class="elgg-tags">
<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Perl&search_type=tags" rel="tag">Perl</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Special&search_type=tags" rel="tag">Special</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Symbols&search_type=tags" rel="tag">Symbols</a></li>
</ul>
</div><div class="elgg-content">Perl is know for symbols !</div></div>
</div></li><li id="elgg-object-40534" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><div class="elgg-avatar elgg-avatar-tiny">
<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/rahul"><span class="elgg-heading-basic">Rahul Nayak</span>@rahul</a></li></ul><a href="https://bioinformaticsonline.com/profile/rahul" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Rahul Nayak" title="Rahul Nayak" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1438527413&joindate=1378318805&guid=4238&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/blog/view/40534/understand-social-media-importance-for-researchers-with-benefits-to-the-strategy">Understand Social Media Importance for Researchers With Benefits to the Strategy !</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/blog/owner/rahul">Rahul Nayak</a> <acronym title="14 January 2020 @ 11:21pm">61 days ago</acronym> </div> <div class="clearfix">
<ul class="elgg-tags">
<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Understand&search_type=tags" rel="tag">Understand</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Social&search_type=tags" rel="tag">Social</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Media&search_type=tags" rel="tag">Media</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Importance&search_type=tags" rel="tag">Importance</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Researchers&search_type=tags" rel="tag">Researchers</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Benefits&search_type=tags" rel="tag">Benefits</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Strategy&search_type=tags" rel="tag">Strategy</a></li>
</ul>
</div><div class="elgg-content">Why have so many researchers embraced Facebook or Instagram pages? They understand the importance of social media and how it adds value. Now that consumers often experience interactions with companies that are not face-to-face, shifting to social...</div></div>
</div></li></ul></div></div><div class="elgg-module elgg-module-highlight elgg-module-featured" ><div class="elgg-head"><h3>Latest bookmarks</h3></div><div class="elgg-body"><ul class="elgg-list elgg-list-entity"><li id="elgg-object-41442" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><div class="elgg-avatar elgg-avatar-tiny">
<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/neelam"><span class="elgg-heading-basic">Neelam Jha</span>@neelam</a></li></ul><a href="https://bioinformaticsonline.com/profile/neelam" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Neelam Jha" title="Neelam Jha" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1438676154&joindate=1373654124&guid=823&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/bookmarks/view/41442/gsp4pdb-a-web-tool-to-visualize-search-and-explore-protein-ligand-structural-patterns">GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/bookmarks/owner/neelam">Neelam Jha</a> <acronym title="15 March 2020 @ 3:41am">yesterday</acronym> </div> <div class="clearfix">
<ul class="elgg-tags">
<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=GSP4PDB&search_type=tags" rel="tag">GSP4PDB</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=web&search_type=tags" rel="tag">web</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=tool&search_type=tags" rel="tag">tool</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=visualize&search_type=tags" rel="tag">visualize</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=search&search_type=tags" rel="tag">search</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=explore&search_type=tags" rel="tag">explore</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=protein-ligand&search_type=tags" rel="tag">protein-ligand</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=structural&search_type=tags" rel="tag">structural</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=patterns&search_type=tags" rel="tag">patterns</a></li>
</ul>
</div><div class="elgg-content"><span class="elgg-icon elgg-icon-push-pin-alt "></span><a href="http://gdblab.com/gsp4pdb/gsp4pdb2/" rel="nofollow">gdblab.com</a> - GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction.
GSP4PDB is part of the services provided by the Bioinformatic Group of the University of...</div></div>
</div></li><li id="elgg-object-41405" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><div class="elgg-avatar elgg-avatar-tiny">
<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/jit.aber"><span class="elgg-heading-basic">Jit</span>@jit.aber</a></li></ul><a href="https://bioinformaticsonline.com/profile/jit.aber" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Jit" title="Jit" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1374102733&joindate=1373372964&guid=40&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/bookmarks/view/41405/sequence-tube-maps-displays-multiple-genomic-sequences-in-the-form-of-a-tube-map">Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/bookmarks/owner/jit.aber">Jit</a> <acronym title="11 March 2020 @ 1:12am">5 days ago</acronym> </div> <div class="clearfix">
<ul class="elgg-tags">
<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Sequence&search_type=tags" rel="tag">Sequence</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Tube&search_type=tags" rel="tag">Tube</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Maps&search_type=tags" rel="tag">Maps</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=displays&search_type=tags" rel="tag">displays</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=multiple&search_type=tags" rel="tag">multiple</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=genomic&search_type=tags" rel="tag">genomic</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=sequences&search_type=tags" rel="tag">sequences</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=tube&search_type=tags" rel="tag">tube</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=map&search_type=tags" rel="tag">map</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=graphmap&search_type=tags" rel="tag">graphmap</a></li>
</ul>
</div><div class="elgg-content"><span class="elgg-icon elgg-icon-push-pin-alt "></span><a href="https://github.com/vgteam/sequenceTubeMap" rel="nofollow">github.com</a> - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg)
Link to working demo:...</div></div>
</div></li><li id="elgg-object-41397" class="elgg-item"><div class="elgg-image-block clearfix" >
<div class="elgg-image"><div class="elgg-avatar elgg-avatar-tiny">
<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/jit.aber"><span class="elgg-heading-basic">Jit</span>@jit.aber</a></li></ul><a href="https://bioinformaticsonline.com/profile/jit.aber" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Jit" title="Jit" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1374102733&joindate=1373372964&guid=40&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/bookmarks/view/41397/svaba-structural-variation-and-indel-detection-by-local-assembly">SvABA: Structural variation and indel detection by local assembly</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/bookmarks/owner/jit.aber">Jit</a> <acronym title="10 March 2020 @ 7:52am">6 days ago</acronym> </div> <div class="clearfix">
<ul class="elgg-tags">
<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=SvABA&search_type=tags" rel="tag">SvABA</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Structural&search_type=tags" rel="tag">Structural</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=variation&search_type=tags" rel="tag">variation</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=indel&search_type=tags" rel="tag">indel</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=detection&search_type=tags" rel="tag">detection</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=local&search_type=tags" rel="tag">local</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=assembly&search_type=tags" rel="tag">assembly</a></li>
</ul>
</div><div class="elgg-content"><span class="elgg-icon elgg-icon-push-pin-alt "></span><a href="https://github.com/walaj/svaba" rel="nofollow">github.com</a> - SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler) by Jared Simpson, and BWA-MEM by Heng Li....</div></div>
</div></li><li id="elgg-object-41362" class="elgg-item"><div class="elgg-image-block clearfix" >
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<span class="elgg-icon elgg-icon-hover-menu "></span><ul class="elgg-menu elgg-menu-hover"><li><a href="https://bioinformaticsonline.com/profile/rahul"><span class="elgg-heading-basic">Rahul Nayak</span>@rahul</a></li></ul><a href="https://bioinformaticsonline.com/profile/rahul" class=""><img src="https://bioinformaticsonline.com/_graphics/spacer.gif" alt="Rahul Nayak" title="Rahul Nayak" class="" style="background: url(https://bioinformaticsonline.com/mod/profile/icondirect.php?lastcache=1438527413&joindate=1378318805&guid=4238&size=tiny) no-repeat;"/></a></div>
</div><div class="elgg-body"><h3><a href="https://bioinformaticsonline.com/bookmarks/view/41362/genemates-an-r-package-for-detecting-horizontal-gene-co-transfer-between-bacteria-using-gene-gene-associations-controlled-for-population-structure">GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene...</a></h3><div class="elgg-subtext">By <a href="https://bioinformaticsonline.com/bookmarks/owner/rahul">Rahul Nayak</a> <acronym title="7 March 2020 @ 5:52am">9 days ago</acronym> </div> <div class="clearfix">
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<li><span class="elgg-icon elgg-icon-tag "></span></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=GeneMates&search_type=tags" rel="tag">GeneMates</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=R&search_type=tags" rel="tag">R</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=package&search_type=tags" rel="tag">package</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Horizontal&search_type=tags" rel="tag">Horizontal</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Gene&search_type=tags" rel="tag">Gene</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Co-transfer&search_type=tags" rel="tag">Co-transfer</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Bacteria&search_type=tags" rel="tag">Bacteria</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Associations&search_type=tags" rel="tag">Associations</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Population&search_type=tags" rel="tag">Population</a></li><li class="elgg-tag"><a href="https://bioinformaticsonline.com/search?q=Structure&search_type=tags" rel="tag">Structure</a></li>
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</div><div class="elgg-content"><span class="elgg-icon elgg-icon-push-pin-alt "></span><a href="https://github.com/wanyuac/GeneMates" rel="nofollow">github.com</a> - GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where...</div></div>
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