Our Sponsors



Download BioinformaticsOnline(BOL) Apps in your chrome browser.




Commands to install conda in Ubuntu !

  • Public
By Jit 1503 days ago
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd jittmp/ jit@jit-HP-Pro-3335-MT:~/Downloads/jittmp$ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 654M 100 654M 0 0 33.6M 0 0:00:19 0:00:19 --:--:-- 33.2M jit@jit-HP-Pro-3335-MT:~/Downloads/jittmp$ sha256sum Anaconda3-2019.03-Linux-x86_64.sh 45c851b7497cc14d5ca060064394569f724b67d9b5f98a926ed49b834a6bb73a Anaconda3-2019.03-Linux-x86_64.sh jit@jit-HP-Pro-3335-MT:~/Downloads/jittmp$ bash Anaconda3-2019.03-Linux-x86_64.sh Welcome to Anaconda3 2019.03 In order to continue the installation process, please review the license agreement. Please, press ENTER to continue >>> =================================== Anaconda End User License Agreement =================================== Copyright 2015, Anaconda, Inc. All rights reserved under the 3-clause BSD License: Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, th is list of conditions and the following disclaimer in the documentation and/or o ther materials provided with the distribution. * Neither the name of Anaconda, Inc. ("Anaconda, Inc.") nor the names of its c ontributors may be used to endorse or promote products derived from this softwar e without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WA RRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL ANACONDA, INC. BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL , SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, P ROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN C ONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING I N ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Notice of Third Party Software Licenses ======================================= Anaconda Distribution contains open source software packages from third parties. These are available on an "as is" basis and subject to their individual license agreements. These licenses are available in Anaconda Distribution or at http:// docs.anaconda.com/anaconda/pkg-docs. Any binary packages of these third party to ols you obtain via Anaconda Distribution are subject to their individual license s as well as the Anaconda license. Anaconda, Inc. reserves the right to change w hich third party tools are provided in Anaconda Distribution. In particular, Anaconda Distribution contains re-distributable, run-time, shared -library files from the Intel(TM) Math Kernel Library ("MKL binaries"). You are specifically authorized to use the MKL binaries with your installation of Anacon da Distribution. You are also authorized to redistribute the MKL binaries with A naconda Distribution or in the conda package that contains them. Use and redistr ibution of the MKL binaries are subject to the licensing terms located at https: //software.intel.com/en-us/license/intel-simplified-software-license. If needed, instructions for removing the MKL binaries after installation of Anaconda Distr ibution are available at http://www.anaconda.com. Anaconda Distribution also contains cuDNN software binaries from NVIDIA Corporat ion ("cuDNN binaries"). You are specifically authorized to use the cuDNN binarie s with your installation of Anaconda Distribution. You are also authorized to re distribute the cuDNN binaries with an Anaconda Distribution package that contain s them. If needed, instructions for removing the cuDNN binaries after installati on of Anaconda Distribution are available at http://www.anaconda.com. Anaconda Distribution also contains Visual Studio Code software binaries from Mi crosoft Corporation ("VS Code"). You are specifically authorized to use VS Code with your installation of Anaconda Distribution. Use of VS Code is subject to th e licensing terms located at https://code.visualstudio.com/License. Cryptography Notice =================== This distribution includes cryptographic software. The country in which you curr ently reside may have restrictions on the import, possession, use, and/or re-exp ort to another country, of encryption software. BEFORE using any encryption soft ware, please check your country's laws, regulations and policies concerning the import, possession, or use, and re-export of encryption software, to see if this is permitted. See the Wassenaar Arrangement http://www.wassenaar.org/ for more information. Anaconda, Inc. has self-classified this software as Export Commodity Control Num ber (ECCN) 5D992b, which includes mass market information security software usin g or performing cryptographic functions with asymmetric algorithms. No license i s required for export of this software to non-embargoed countries. In addition, the Intel(TM) Math Kernel Library contained in Anaconda, Inc.'s software is clas sified by Intel(TM) as ECCN 5D992b with no license required for export to non-em bargoed countries and Microsoft's Visual Studio Code software is classified by M icrosoft as ECCN 5D992.c with no license required for export to non-embargoed co untries. The following packages are included in this distribution that relate to cryptogr aphy: openssl The OpenSSL Project is a collaborative effort to develop a robust, commercia l-grade, full-featured, and Open Source toolkit implementing the Transport Layer Security (TLS) and Secure Sockets Layer (SSL) protocols as well as a full-stren gth general purpose cryptography library. pycrypto A collection of both secure hash functions (such as SHA256 and RIPEMD160), a nd various encryption algorithms (AES, DES, RSA, ElGamal, etc.). pyopenssl A thin Python wrapper around (a subset of) the OpenSSL library. kerberos (krb5, non-Windows platforms) A network authentication protocol designed to provide strong authentication for client/server applications by using secret-key cryptography. cryptography A Python library which exposes cryptographic recipes and primitives. Do you accept the license terms? [yes|no] Please answer 'yes' or 'no':' >>> yes Anaconda3 will now be installed into this location: /home/jit/anaconda3 - Press ENTER to confirm the location - Press CTRL-C to abort the installation - Or specify a different location below [/home/jit/anaconda3] >>> PREFIX=/home/jit/anaconda3 installing: python-3.7.3-h0371630_0 ... Python 3.7.3 installing: conda-env-2.6.0-1 ... installing: blas-1.0-mkl ... installing: ca-certificates-2019.1.23-0 ... installing: intel-openmp-2019.3-199 ... installing: libgcc-ng-8.2.0-hdf63c60_1 ... installing: libgfortran-ng-7.3.0-hdf63c60_0 ... installing: libstdcxx-ng-8.2.0-hdf63c60_1 ... installing: bzip2-1.0.6-h14c3975_5 ... installing: expat-2.2.6-he6710b0_0 ... installing: fribidi-1.0.5-h7b6447c_0 ... installing: gmp-6.1.2-h6c8ec71_1 ... installing: graphite2-1.3.13-h23475e2_0 ... installing: icu-58.2-h9c2bf20_1 ... installing: jbig-2.1-hdba287a_0 ... installing: jpeg-9b-h024ee3a_2 ... installing: libffi-3.2.1-hd88cf55_4 ... installing: liblief-0.9.0-h7725739_2 ... installing: libsodium-1.0.16-h1bed415_0 ... installing: libtool-2.4.6-h7b6447c_5 ... installing: libuuid-1.0.3-h1bed415_2 ... installing: libxcb-1.13-h1bed415_1 ... installing: lz4-c-1.8.1.2-h14c3975_0 ... installing: lzo-2.10-h49e0be7_2 ... installing: mkl-2019.3-199 ... installing: ncurses-6.1-he6710b0_1 ... installing: openssl-1.1.1b-h7b6447c_1 ... installing: patchelf-0.9-he6710b0_3 ... installing: pcre-8.43-he6710b0_0 ... installing: pixman-0.38.0-h7b6447c_0 ... installing: snappy-1.1.7-hbae5bb6_3 ... installing: xz-5.2.4-h14c3975_4 ... installing: yaml-0.1.7-had09818_2 ... installing: zlib-1.2.11-h7b6447c_3 ... installing: blosc-1.15.0-hd408876_0 ... installing: glib-2.56.2-hd408876_0 ... installing: hdf5-1.10.4-hb1b8bf9_0 ... installing: libedit-3.1.20181209-hc058e9b_0 ... installing: libpng-1.6.36-hbc83047_0 ... installing: libssh2-1.8.0-h1ba5d50_4 ... installing: libxml2-2.9.9-he19cac6_0 ... installing: mpfr-4.0.1-hdf1c602_3 ... installing: pandoc-2.2.3.2-0 ... installing: readline-7.0-h7b6447c_5 ... installing: tk-8.6.8-hbc83047_0 ... installing: zeromq-4.3.1-he6710b0_3 ... installing: zstd-1.3.7-h0b5b093_0 ... installing: dbus-1.13.6-h746ee38_0 ... installing: freetype-2.9.1-h8a8886c_1 ... installing: gstreamer-1.14.0-hb453b48_1 ... installing: krb5-1.16.1-h173b8e3_7 ... installing: libarchive-3.3.3-h5d8350f_5 ... installing: libtiff-4.0.10-h2733197_2 ... installing: libxslt-1.1.33-h7d1a2b0_0 ... installing: mpc-1.1.0-h10f8cd9_1 ... installing: sqlite-3.27.2-h7b6447c_0 ... installing: unixodbc-2.3.7-h14c3975_0 ... installing: fontconfig-2.13.0-h9420a91_0 ... installing: gst-plugins-base-1.14.0-hbbd80ab_1 ... installing: libcurl-7.64.0-h20c2e04_2 ... installing: alabaster-0.7.12-py37_0 ... installing: asn1crypto-0.24.0-py37_0 ... installing: atomicwrites-1.3.0-py37_1 ... installing: attrs-19.1.0-py37_1 ... installing: backcall-0.1.0-py37_0 ... installing: backports-1.0-py37_1 ... installing: bitarray-0.8.3-py37h14c3975_0 ... installing: boto-2.49.0-py37_0 ... installing: cairo-1.14.12-h8948797_3 ... installing: certifi-2019.3.9-py37_0 ... installing: chardet-3.0.4-py37_1 ... installing: click-7.0-py37_0 ... installing: cloudpickle-0.8.0-py37_0 ... installing: colorama-0.4.1-py37_0 ... installing: contextlib2-0.5.5-py37_0 ... installing: curl-7.64.0-hbc83047_2 ... installing: dask-core-1.1.4-py37_1 ... installing: decorator-4.4.0-py37_1 ... installing: defusedxml-0.5.0-py37_1 ... installing: docutils-0.14-py37_0 ... installing: entrypoints-0.3-py37_0 ... installing: et_xmlfile-1.0.1-py37_0 ... installing: fastcache-1.0.2-py37h14c3975_2 ... installing: filelock-3.0.10-py37_0 ... installing: future-0.17.1-py37_0 ... installing: glob2-0.6-py37_1 ... installing: gmpy2-2.0.8-py37h10f8cd9_2 ... installing: greenlet-0.4.15-py37h7b6447c_0 ... installing: heapdict-1.0.0-py37_2 ... installing: idna-2.8-py37_0 ... installing: imagesize-1.1.0-py37_0 ... installing: ipython_genutils-0.2.0-py37_0 ... installing: itsdangerous-1.1.0-py37_0 ... installing: jdcal-1.4-py37_0 ... installing: jeepney-0.4-py37_0 ... installing: kiwisolver-1.0.1-py37hf484d3e_0 ... installing: lazy-object-proxy-1.3.1-py37h14c3975_2 ... installing: llvmlite-0.28.0-py37hd408876_0 ... installing: locket-0.2.0-py37_1 ... installing: lxml-4.3.2-py37hefd8a0e_0 ... installing: markupsafe-1.1.1-py37h7b6447c_0 ... installing: mccabe-0.6.1-py37_1 ... installing: mistune-0.8.4-py37h7b6447c_0 ... installing: mkl-service-1.1.2-py37he904b0f_5 ... installing: more-itertools-6.0.0-py37_0 ... installing: mpmath-1.1.0-py37_0 ... installing: msgpack-python-0.6.1-py37hfd86e86_1 ... installing: numpy-base-1.16.2-py37hde5b4d6_0 ... installing: olefile-0.46-py37_0 ... installing: pandocfilters-1.4.2-py37_1 ... installing: parso-0.3.4-py37_0 ... installing: pep8-1.7.1-py37_0 ... installing: pickleshare-0.7.5-py37_0 ... installing: pkginfo-1.5.0.1-py37_0 ... installing: pluggy-0.9.0-py37_0 ... installing: ply-3.11-py37_0 ... installing: prometheus_client-0.6.0-py37_0 ... installing: psutil-5.6.1-py37h7b6447c_0 ... installing: ptyprocess-0.6.0-py37_0 ... installing: py-1.8.0-py37_0 ... installing: py-lief-0.9.0-py37h7725739_2 ... installing: pycodestyle-2.5.0-py37_0 ... installing: pycosat-0.6.3-py37h14c3975_0 ... installing: pycparser-2.19-py37_0 ... installing: pycrypto-2.6.1-py37h14c3975_9 ... installing: pycurl-7.43.0.2-py37h1ba5d50_0 ... installing: pyflakes-2.1.1-py37_0 ... installing: pyodbc-4.0.26-py37he6710b0_0 ... installing: pyparsing-2.3.1-py37_0 ... installing: pysocks-1.6.8-py37_0 ... installing: python-libarchive-c-2.8-py37_6 ... installing: pytz-2018.9-py37_0 ... installing: pyyaml-5.1-py37h7b6447c_0 ... installing: pyzmq-18.0.0-py37he6710b0_0 ... installing: qt-5.9.7-h5867ecd_1 ... installing: qtpy-1.7.0-py37_1 ... installing: rope-0.12.0-py37_0 ... installing: ruamel_yaml-0.15.46-py37h14c3975_0 ... installing: send2trash-1.5.0-py37_0 ... installing: simplegeneric-0.8.1-py37_2 ... installing: sip-4.19.8-py37hf484d3e_0 ... installing: six-1.12.0-py37_0 ... installing: snowballstemmer-1.2.1-py37_0 ... installing: sortedcontainers-2.1.0-py37_0 ... installing: soupsieve-1.8-py37_0 ... installing: sphinxcontrib-1.0-py37_1 ... installing: sqlalchemy-1.3.1-py37h7b6447c_0 ... installing: tblib-1.3.2-py37_0 ... installing: testpath-0.4.2-py37_0 ... installing: toolz-0.9.0-py37_0 ... installing: tornado-6.0.2-py37h7b6447c_0 ... installing: tqdm-4.31.1-py37_1 ... installing: unicodecsv-0.14.1-py37_0 ... installing: wcwidth-0.1.7-py37_0 ... installing: webencodings-0.5.1-py37_1 ... installing: werkzeug-0.14.1-py37_0 ... installing: wrapt-1.11.1-py37h7b6447c_0 ... installing: wurlitzer-1.0.2-py37_0 ... installing: xlrd-1.2.0-py37_0 ... installing: xlsxwriter-1.1.5-py37_0 ... installing: xlwt-1.3.0-py37_0 ... installing: zipp-0.3.3-py37_1 ... installing: babel-2.6.0-py37_0 ... installing: backports.os-0.1.1-py37_0 ... installing: backports.shutil_get_terminal_size-1.0.0-py37_2 ... installing: beautifulsoup4-4.7.1-py37_1 ... installing: cffi-1.12.2-py37h2e261b9_1 ... installing: cycler-0.10.0-py37_0 ... installing: cytoolz-0.9.0.1-py37h14c3975_1 ... installing: harfbuzz-1.8.8-hffaf4a1_0 ... installing: html5lib-1.0.1-py37_0 ... installing: importlib_metadata-0.8-py37_0 ... installing: jedi-0.13.3-py37_0 ... installing: mkl_random-1.0.2-py37hd81dba3_0 ... installing: multipledispatch-0.6.0-py37_0 ... installing: nltk-3.4-py37_1 ... installing: openpyxl-2.6.1-py37_1 ... installing: packaging-19.0-py37_0 ... installing: partd-0.3.10-py37_1 ... installing: pathlib2-2.3.3-py37_0 ... installing: pexpect-4.6.0-py37_0 ... installing: pillow-5.4.1-py37h34e0f95_0 ... installing: pyqt-5.9.2-py37h05f1152_2 ... installing: pyrsistent-0.14.11-py37h7b6447c_0 ... installing: python-dateutil-2.8.0-py37_0 ... installing: qtawesome-0.5.7-py37_1 ... installing: setuptools-40.8.0-py37_0 ... installing: singledispatch-3.4.0.3-py37_0 ... installing: sortedcollections-1.1.2-py37_0 ... installing: sphinxcontrib-websupport-1.1.0-py37_1 ... installing: sympy-1.3-py37_0 ... installing: terminado-0.8.1-py37_1 ... installing: traitlets-4.3.2-py37_0 ... installing: zict-0.1.4-py37_0 ... installing: astroid-2.2.5-py37_0 ... installing: bleach-3.1.0-py37_0 ... installing: clyent-1.2.2-py37_1 ... installing: cryptography-2.6.1-py37h1ba5d50_0 ... installing: cython-0.29.6-py37he6710b0_0 ... installing: distributed-1.26.0-py37_1 ... installing: get_terminal_size-1.0.0-haa9412d_0 ... installing: gevent-1.4.0-py37h7b6447c_0 ... installing: isort-4.3.16-py37_0 ... installing: jinja2-2.10-py37_0 ... installing: jsonschema-3.0.1-py37_0 ... installing: jupyter_core-4.4.0-py37_0 ... installing: navigator-updater-0.2.1-py37_0 ... installing: networkx-2.2-py37_1 ... installing: nose-1.3.7-py37_2 ... installing: pango-1.42.4-h049681c_0 ... installing: path.py-11.5.0-py37_0 ... installing: pygments-2.3.1-py37_0 ... installing: pytest-4.3.1-py37_0 ... installing: wheel-0.33.1-py37_0 ... installing: conda-verify-3.1.1-py37_0 ... installing: flask-1.0.2-py37_1 ... installing: jupyter_client-5.2.4-py37_0 ... installing: nbformat-4.4.0-py37_0 ... installing: pip-19.0.3-py37_0 ... installing: prompt_toolkit-2.0.9-py37_0 ... installing: pylint-2.3.1-py37_0 ... installing: pyopenssl-19.0.0-py37_0 ... installing: pytest-openfiles-0.3.2-py37_0 ... installing: pytest-remotedata-0.3.1-py37_0 ... installing: secretstorage-3.1.1-py37_0 ... installing: ipython-7.4.0-py37h39e3cac_0 ... installing: keyring-18.0.0-py37_0 ... installing: nbconvert-5.4.1-py37_3 ... installing: urllib3-1.24.1-py37_0 ... installing: ipykernel-5.1.0-py37h39e3cac_0 ... installing: requests-2.21.0-py37_0 ... installing: anaconda-client-1.7.2-py37_0 ... installing: conda-4.6.11-py37_0 ... installing: jupyter_console-6.0.0-py37_0 ... installing: notebook-5.7.8-py37_0 ... installing: qtconsole-4.4.3-py37_0 ... installing: sphinx-1.8.5-py37_0 ... installing: spyder-kernels-0.4.2-py37_0 ... installing: anaconda-navigator-1.9.7-py37_0 ... installing: anaconda-project-0.8.2-py37_0 ... installing: conda-build-3.17.8-py37_0 ... installing: jupyterlab_server-0.2.0-py37_0 ... installing: numpydoc-0.8.0-py37_0 ... installing: widgetsnbextension-3.4.2-py37_0 ... installing: ipywidgets-7.4.2-py37_0 ... installing: jupyterlab-0.35.4-py37hf63ae98_0 ... installing: spyder-3.3.3-py37_0 ... installing: _ipyw_jlab_nb_ext_conf-0.1.0-py37_0 ... installing: jupyter-1.0.0-py37_7 ... installing: bokeh-1.0.4-py37_0 ... installing: bottleneck-1.2.1-py37h035aef0_1 ... installing: h5py-2.9.0-py37h7918eee_0 ... installing: imageio-2.5.0-py37_0 ... installing: matplotlib-3.0.3-py37h5429711_0 ... installing: mkl_fft-1.0.10-py37ha843d7b_0 ... installing: numpy-1.16.2-py37h7e9f1db_0 ... installing: numba-0.43.1-py37h962f231_0 ... installing: numexpr-2.6.9-py37h9e4a6bb_0 ... installing: pandas-0.24.2-py37he6710b0_0 ... installing: pytest-arraydiff-0.3-py37h39e3cac_0 ... installing: pytest-doctestplus-0.3.0-py37_0 ... installing: pywavelets-1.0.2-py37hdd07704_0 ... installing: scipy-1.2.1-py37h7c811a0_0 ... installing: bkcharts-0.2-py37_0 ... installing: dask-1.1.4-py37_1 ... installing: patsy-0.5.1-py37_0 ... installing: pytables-3.5.1-py37h71ec239_0 ... installing: pytest-astropy-0.5.0-py37_0 ... installing: scikit-image-0.14.2-py37he6710b0_0 ... installing: scikit-learn-0.20.3-py37hd81dba3_0 ... installing: astropy-3.1.2-py37h7b6447c_0 ... installing: statsmodels-0.9.0-py37h035aef0_0 ... installing: seaborn-0.9.0-py37_0 ... installing: anaconda-2019.03-py37_0 ... installation finished. Do you wish the installer to initialize Anaconda3 by running conda init? [yes|no] [no] >>> yes WARNING: The conda.compat module is deprecated and will be removed in a future release. no change /home/jit/anaconda3/condabin/conda no change /home/jit/anaconda3/bin/conda no change /home/jit/anaconda3/bin/conda-env no change /home/jit/anaconda3/bin/activate no change /home/jit/anaconda3/bin/deactivate no change /home/jit/anaconda3/etc/profile.d/conda.sh no change /home/jit/anaconda3/etc/fish/conf.d/conda.fish no change /home/jit/anaconda3/shell/condabin/Conda.psm1 no change /home/jit/anaconda3/shell/condabin/conda-hook.ps1 no change /home/jit/anaconda3/lib/python3.7/site-packages/xonsh/conda.xsh no change /home/jit/anaconda3/etc/profile.d/conda.csh modified /home/jit/.bashrc ==> For changes to take effect, close and re-open your current shell. <== If you'd prefer that conda's base environment not be activated on startup, set the auto_activate_base parameter to false: conda config --set auto_activate_base false Thank you for installing Anaconda3! =========================================================================== Anaconda and JetBrains are working together to bring you Anaconda-powered environments tightly integrated in the PyCharm IDE. PyCharm for Anaconda is available at: https://www.anaconda.com/pycharm