BOL: Python script to check sequence length in multifasta file

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Jit
Python script to check sequence length in multifasta file

Python script to check sequence length in multifasta file

By Jit 1452 days ago

#!/usr/bin/python
from Bio import SeqIO
import sys
cmdargs = str(sys.argv)
for seq_record in SeqIO.parse(str(sys.argv[1]), "fasta"):
 output_line = '%s\t%i' % \
(seq_record.id, len(seq_record))
 print(output_line)