Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
Create random 1000 INDEL in genome !
By Jit 1204 days ago
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -indel_count 1000 -prefix simuINDEL
[Sun Jan 10 16:14:00 2021]
Starting simuG ..
[Sun Jan 10 16:14:00 2021]
Check specified options ..
Running simuG for SNP/INDEL simulation >>
Ignore all options for CNV/inversion/translocation simulation.
This simulation use the random seed: 1678440514
The option indel_count has been specified: indel_count = 1000
The option ins_del_ratio has been specified: ins_del_ratio = 1
The option indel_size_powerlaw_alpha has been specified: indel_size_powerlaw_alpha = 2
The option indel_size_powerlaw_constant has been specified: indel_size_powerlaw_constant = 0.5
[Sun Jan 10 16:14:00 2021]
Introducing random INDELs based on the following parameters:
> indel_count = 1000
> ins_del_ratio = 1
> indel_size_powerlaw_alpha = 2
> indel_size_powerlaw_constant = 0.5
[Sun Jan 10 16:14:00 2021]
Simulation completed! :)
[Sun Jan 10 16:14:00 2021]
Generating output files ..
Generating the correspondance map for genomic variants introduced during simulation:
simuINDEL.refseq2simseq.map.txt
Generating reference-based vcf file for genomic variants introduced during simulation:
simuINDEL.refseq2simseq.INDEL.vcf
[Sun Jan 10 16:14:00 2021]
Done! :)
