Jit
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Create random 1000 CNVs in genome !
By Jit 1412 days ago
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.genome.fa -cnv_count 100 -prefix simuCNV
[Sun Jan 10 16:24:20 2021]
Starting simuG ..
[Sun Jan 10 16:24:20 2021]
Check specified options ..
Running simuG for CNV simulation >>
Ignore all options for inversion/translocation simulation.
This simulation use the random seed: 678641233
The option cnv_count has been specified: cnv_count = 100
The option duplication_tandem_dispersed_ratio has been specified: duplication_tandem_dispersed_ratio = 1
The option cnv_max_copy_number has been specified: cnv_max_copy_number = 10
The option cnv_min_size has been specified: cnv_min_size = 100
The option cnv_min_size has been specified: cnv_max_size = 10000
[Sun Jan 10 16:24:20 2021]
Introducing random CNVs with the following parameters:
> cnv_count = 100
> cnv_gain_loss_ratio = 1
> duplication_tandem_dispersed_ratio = 1
> cnv_max_copy_number = 10
> cnv_min_size = 100
> cnv_max_size = 10000
[Sun Jan 10 16:24:20 2021]
Simulation completed! :)
[Sun Jan 10 16:24:20 2021]
Generating output files ..
Generating the correspondance map for genomic variants introduced during simulation:
simuCNV.refseq2simseq.map.txt
Generating reference-based vcf file for genomic variants introduced during simulation:
simuCNV.refseq2simseq.CNV.vcf
[Sun Jan 10 16:24:20 2021]
Done! :)
