Jit
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Create random 5 inversions in genome !
By Jit 1205 days ago
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome.fa -inversion_count 5 -prefix simuINV
[Sun Jan 10 16:30:40 2021]
Starting simuG ..
[Sun Jan 10 16:30:40 2021]
Check specified options ..
Running simuG for inversion simulation >>
Ignore all options for translocation simulation.
This simulation use the random seed: 639103429
The option inversion_count has been specified: inversion_count = 5
The option inversion_min_size has been specified: inversion_min_size = 1000
The option inversion_max_size has been specified: inversion_max_size = 100000
[Sun Jan 10 16:30:40 2021]
Introducing random Inversions based on the following parameters:
> inversion_count = 5
> inversion_min_size = 1000
> inversion_max_size = 100000
[Sun Jan 10 16:30:40 2021]
Simulation completed! :)
[Sun Jan 10 16:30:40 2021]
Generating output files ..
Generating the correspondance map for genomic variants introduced during simulation:
simuINV.refseq2simseq.map.txt
Generating reference-based vcf file for genomic variants introduced during simulation:
simuINV.refseq2simseq.inversion.vcf
[Sun Jan 10 16:30:40 2021]
Done! :)
