Neelam Jha
Bioinformatics Beginner
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Commandline to Extract a list of specific read IDs from a bam file
By Neelam Jha 996 days ago
#Save all the IDs in IDs.txt file
#Run it on BAM file
samtools view file.bam | fgrep -w -f IDs.txt
#Save all the IDs in IDs.txt file
#Run it on BAM file
samtools view file.bam | fgrep -w -f IDs.txt