BOL

NGSplot program allows you to easily visualize your NGS samples at functional genomic regions. https://code.google.com/p/ngsplot/ #NGS #ngs #Plot #ngsplot #Visualize #R

A Quick Guide to Organizing Computational Biology Projects http://www.ploscompbiol.org/article/info%3Adoi/10.1371/journal.pcbi.1000424 #ComBio #Projects

perl -nle '$count += () = /XY[0-9]+/g; END {print $count}' inputfile #Count #Perl #Perloneliner

Linux onliner for bioinformatician https://github.com/stephenturner/oneliners #Linux #Onliner

Metagenomics: tools, comparisons and many applications http://blogs.biomedcentral.com/bmcseriesblog/2014/04/10/metagenomics-tools-comparisons-and-many-applications/

If You Can't Measure It, You Can't Manage It. http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003462 #PLOS #Data #Bio

Download the human genome hg19 wget --timestamping 'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/chr*.fa.gz' #Human #Genome #Download #UCSC

There is a new tool "Mugsy" which is a multiple whole genome aligner. http://mugsy.sourceforge.net/ #MSA #Alignments

Bioinformatics workshop guideline http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003485 #Workshop

Perl module http://perlmaven.com/how-to-create-a-perl-module-for-code-reuse #Perl #Module #Package

Bioinformatics scripts http://kirill-kryukov.com/kirr/ #Scripts #Bioinformatics

String algorithm problems to solve ... http://rosalind.info/problems/topics/string-algorithms/ #Algorithms #String

Fish have the genetic machinery necessary to make fingers but it is not switched on. http://www.bbc.co.uk/news/science-environment-25815354

Some useful open source software/tools http://lifehacker.biz/articles/best-open-source-software/ #OpenSource

Perl Regular expression http://raven.iab.alaska.edu/~ntakebay/teaching/programming/perl2nd/node1.html #Perl #RegularExpression