Results for "Alignment"

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  • AutoOrthoGen http://www.cs.toronto.edu/~buske/documents/buske_2009_autoorthogen.pdf #Genome #Orthologous #Evolver #Multiple #Alignment

    Tags: Genome, Orthologous, Evolver, Multiple, Alignment

    944 days ago

  • Sequence analysis http://bio.lundberg.gu.se/courses/ht03/bio1/bio1_e2b.html #Sequence #Alignment #Algorithms #C #C++

    Tags: Sequence, Alignment, Algorithms, C, C

    927 days ago

  • AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references http://bioinformatics.oxfordjournals.org/content/30/12/i319.full #AlignGraph #Alignment #Algo #Referen

    Tags: AlignGraph, Alignment, Algo, Referen

    927 days ago

  • https://github.com/exascience/elprep #Alignment #tool

    Tags: Alignment, tool

    683 days ago

  • https://github.com/GWW/RNASequel #Alignment #artifacts

    Tags: Alignment, artifacts

    683 days ago

  • Dynamic programming http://www.avatar.se/molbioinfo2001/dynprog/dynamic.html #Programming #Alignment #Sequence #Dynamic

    Tags: Programming, Alignment, Sequence, Dynamic

    423 days ago

  • GLIBC_2.14 error with SatsumaSynteny !!

    I run SatsumaSynteny on my server using following command: [jit@hm satsuma-code-0]$ ./SatsumaSynteny -q Genome/renamedG.fa -t Genome/genome_v4.fasta -o Genome/OutFile -m 128 -ni 10 -n 256 -chain_only But it kill the program with followng error:  ./SatsumaSynteny: /lib64/libc.so.6: version...

    Tags: Satsuma, Synteny, SatsumaSynteny, BLIBC, Redhat, Linux, Server, Comparative Genomics, Alignment

    418 days ago

  • mrFAST: Micro Read Fast Alignment Search Tool

    mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, describes ...

    Tags: Bioinformatics, FASTQ, Reads, NGS, Mapping, Alignment, Reference

    398 days ago

  • Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences

    Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For visualisation, Smash outputs a SVG image, with an ...

    Tags: Bioinformatics, Visualization, Alignment, Free, NGS, Comparative Genomics

    398 days ago

  • YASS :: genomic similarity search tool

    YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to de...

    Tags: Bioinformatics, NGS, Alignment, Genome, YASS

    392 days ago