Results for "Alignment"

Tags

  • GenomeComp

    GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.It can be easily used to compare, parsi...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, GenomeComp

    221 days ago

  • sockeye

    This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D model...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, sockeye, 3D

    221 days ago

  • J-Circos

    Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom in/out functions. J-Circos uses the Java computer ...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos

    221 days ago

  • Laj: viewing and manipulating the output from pairwise alignment programs

    Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing addi...

    Tags: Bioinformatics, Laj, View, Alignment, Lastz

    209 days ago

  • Cgaln

    Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two steps, at the block level and then at the nucleotide level. The f...

    Tags: Bioinformatics, Cgaln, Alignment, Genome

    216 days ago

  • AVID: A Global Alignment Program https://www.ncbi.nlm.nih.gov/pmc/articles/PMC430967/ #AVID #Alignment #Global #Sequence #Genome

    Tags: AVID, Alignment, Global, Sequence, Genome

    214 days ago

  • bedtools

    Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one tointersect, merge, count,&...

    Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM

    214 days ago

  • Understanding MegaBlast https://gordonlab.wustl.edu/btheta/blast/docs/megablast_readme.html #Blast #BLASTn #MegaBlast #Alignment

    Tags: Blast, BLASTn, MegaBlast, Alignment

    208 days ago

  • Plotting alignment genome.crg.es/software/gfftools/GFF2APLOT.html #Alignment #Plot #Genome #gff #gfftools

    Tags: Alignment, Plot, Genome, gff, gfftools

    173 days ago

  • DIAMOND

    DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a...

    Tags: Bioinformatics, Alignment, DIAMOND, BLAST, DNA, Protein

    152 days ago