Results for "Ancestral"

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  • Tracing the evolution of amniote chromosomes http://link.springer.com/article/10.1007/s00412-014-0456-y #Evolution #Amniote #Chromosome #NGS #Ancestral #Karyotypes

    Tags: Evolution, Amniote, Chromosome, NGS, Ancestral, Karyotypes

    3455 days ago

  • DeCoSTAR - Detection of Co-evolution

    DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciat...

    Tags: Bioinformatics, DeCoSTAR, Detection, Co-evolution, Reconstruction, Ancestral, Gene, Genome

    2531 days ago

  • CAR: Reconstructing Contiguous Regions of an Ancestral Genome

    We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the results from this method with data from chromosome painting experiments to produce a map of an early mammalian genome that accounts fo...

    Tags: Reconstruction, Contiguous, Regions, Ancestral, Genome, Bioinformatics, CAR

    2497 days ago

  • ANGES: reconstructing ANcestral GEnomeS maps

    This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated in August 2014) Examples with results (featured ancestors: boreoeutherian,...

    Tags: Reconstruction, Ancestral, Genomes, Maps, ANGES

    2497 days ago

  • Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection tools to study molecular evolution

    Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection – is a technique used in the study of molecular evolution. The method consists of the synthesis of an ancestral gene and expression of the correspo...

    Tags: Ancestral, sequence, reconstruction, ASR, ancestral, gene, sequence, reconstruction, resurrection, technique, molecular, evolution

    2483 days ago

  • DESCHRAMBLER

    DESCHRAMBLER is shown to produce highly accurate reconstructions using data simulation and by benchmarking it against other reconstruction tools You can find the detail of reconstructed data at http://bioinfo.konkuk.ac.kr/DESCHRAMBLER/

    Tags: DESCHRAMBLER, Synteny, Ancestral, Reconstruction, Genome

    2455 days ago

  • REGEN: Ancestral Genome Reconstruction for Bacteria

    REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was design...

    Tags: REGEN, Ancestral, Genome, Reconstruction, Bacteria

    2205 days ago

  • Ancestral sequence reconstruction steps !

    Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection – is a technique used in the study of molecular evolution. The method consists of the synthesis of an ancestral gene and expression of the correspo...

    Tags: Ancestral, sequence, reconstruction, steps

    2132 days ago

  • DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications

    we propose a heuristic algorithm, called DUPCAR, for reconstructing ancestral genomic orders with duplications. The method starts from the order of genes in modern genomes and predicts predecessor and successor relationships in the ancestor. Then a greedy algorithm is used to reconstruct the ance...

    Tags: DUPCAR, Reconstructing, Contiguous, Ancestral, Regions, Duplications

    2129 days ago

  • Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life

     Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehensive reconstructions of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been reconstructed for 78 genomes of now-extinct species that were the common ancestors of extant species fr...

    Tags: Ancestral, Genomes, resource, reconstructed, genes, genomes, across, tree, life

    1964 days ago