Results for "Assemblies"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...-73, 2010. PubMedCentral High-quality draft assemblies of mammalian genomes from mas...comparison of annotation in two Bos taurus assemblies. Florea et al., PLoS On...SEM software package] Comparing genomes and assemblies; variant detection Versatil...3770 days ago
Commercial and public next-gen-seq (NGS) software
...short reads generated with the Illumina platform to reference genome assemblies; in a fast and memory-efficie...HS is a whole genome shotgun assembler that can generate high quality assemblies from short reads. Assemblies...3509 days ago
Software packages for next gen sequence analysis
...short reads generated with the Illumina platform to reference genome assemblies; in a fast and memory-efficie...HS is a whole genome shotgun assembler that can generate high quality assemblies from short reads. Assemblies...3233 days ago
Genome Assembly Tools and Software - PART1 !!
...ty Assessment Tool for Genome Assemblies QUAST evaluates genome assemblies.QUAST works both with and wit...Assessment of de novo Genome Assemblies TGNet is a Cytoscape-based...and single-cell MDA bacteria assemblies. PERGA 0.5.03.02 –...2676 days ago
Tools for bacterial whole genome annotation
...interactive mode. BlastKOALA is suitable for annotating fully sequenced genomes. PAGIT: Provides a toolkit for improving the quality of genome assemblies created via an assembly softw...2322 days ago
Some useful Bioinformatics links
...and-line-overview.html Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactio...grades.org/v1/sequence/ ksahlin/BESST: BESST - scaffolder for genomic assemblies https://github.com/ksahlin/B...2232 days ago
Gap filling or Contigs extensions tools !
...n paired reads" or "Toward almost closed genomes with GapFiller". There are also some tools like GAPresolution that can help to perform local re-assemblies using 454 reads. We used GAPr...2155 days ago
