Results for "CRAM"
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Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs...2918 days ago
- ...racting with high-throughput sequencing data. It consists of three separate repositories: SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/writing...
2598 days ago
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Bio-Scripts
- ...Count bases in a SAM/BAM/CRAM file CountBasesSpark...Count reads in a SAM/BAM/CRAM file CountReadsSpark...Tools that manipulate read data in SAM, BAM or CRAM format AddCommentsToBam...
2066 days ago
- ...g.mk.in htslib-1.9/configure.ac htslib-1.9/cram/ htslib-1.9/cram/cram.h htslib-1.9/cram/cram_...values.sam htslib-1.9/test/auxf#values_java.cram htslib-1.9/test/auxf.fa hts...ls.o vcfutils.c gcc -g -Wall -O2 -I. -c -o cram/cram_codecs.o cram/cram_codec...
2010 days ago
- +1 more Bio-Scripts
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- Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the information on this pag...
Tags: Bioinformatics, NGS, Assembly, BAM, SAM, CRAM, Picard, FastQC, Tool, Software
2918 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a distribution of proportion of bases covered at or above...Tags: mosdepth, fast, BAM, CRAM, depth, calculation, WGS, exome, target, sequencing
1622 days ago
