Results for "Code"
Bio-Scripts
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2908 days ago
A multilayer perceptron (MLP) neural network in Perl
#!/usr/local/bin/perl -w #################################################### #MLP neural network in Perl Original source code by Phil Brierley #Translated into perl - ccolbourn...2907 days ago
Calculate ATGC percentage in parallel with perl
...new Parallel::ForkManager($max_procs); # Setup a callback for when a child finishes up so we can # get it's exit code $pm->run_on_finish ( sub { my ($pid, $exit_code, $ident) = @_; #print...2647 days ago
Reformat the file names with Perl
...t if $line =~ /^#/; #next if $. == 1; my ($lichenName, $name, $code) = split /\s+/, $line;...t unless defined $lichenName and defined $name and defined $code; $hash{$name}{sps}= $l...2326 days ago
Loop over with all files in a directory in bash
...-2017-11-13/* ref=/media/ComparativeGenomics/ncbi-genomes-2017-11-13/GCA_000196735.1_ASM19673v1_genomic.fna path=/home/urbe/Tools/SATSUMA/satsuma-code-0 for f in $FILES do if...2322 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_help pass_throug...2299 days ago
- You have to compile the code with a C++ compiler. TDM-GCC MinGW compiler which you can download from this link: https://sourceforge.net/projects/tdm-gcc/ Once you download and...
841 days ago
Perl script to run SATSUMA in loop !
...eryfile = "genome.fasta"; # Ur query genome my $tarfile = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # Location of ur SATSUMA...2131 days ago
- ...en BaseCalling analysis directory. ExtractIlluminaBarcodes (Picard) Tool determines the barcode for each read in an Illumina...r information between mates and fix if needed. FixMisencodedBaseQualityReads...
2066 days ago
Installing Platypus on Ubuntu !
...-c -o vcfutils.o vcfutils.c gcc -g -Wall -O2 -I. -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -g -Wall -O2 -I. -c..._module_name) warning: cython/variantcaller.pyx:529:9: Unreachable code building 'variantcaller' ext...2010 days ago
