Results for "Coordinates"
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Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/3000 days ago
- ...program for convenient conversion of genome coordinates (or annotation files) between...F. CrossMap is designed to liftover genome coordinates between assemblies. It’...recommend using CrossMap to convert genome coordinates between species. More at htt...
3000 days ago
- ...efine how a coordinate or coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver). ...
2998 days ago
- ...ntromeres, Centurion predicts most of the centromeres at an average of 5~kb distance from their known locations. Finally, we predict centromere coordinates for six yeast species that cu...
2996 days ago
- ...rrors, but this can be partly compensated by simulating INDEL polymorphisms.Wgsim outputs the simulated polymorphisms, and writes the true read coordinates as well as the number of poly...
2864 days ago
- ...program for convenient conversion of genome coordinates (or annotation files) between...F. CrossMap is designed to liftover genome coordinates between assemblies. It’...;recommend using CrossMap to convert genome coordinates between species....
2790 days ago
- ...structural variants can be complex. This is due to the different resolution that variants are reported from traditional cytogenetic coordinates down to the actual base pair...
2764 days ago
- ...rence or genome-genome alignments is lost for structural variations in the one-dimensional views of most genome browsers showing only reference coordinates. Instead, structural variatio...
2744 days ago
- ...rsity is searching. There are two types of searching depending on the amplicons types (ITS or 16S). If WGS are chosen, then bipype finds the SA coordinates of the input reads and genera...
2703 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome a...2655 days ago
