Results for "Encode"
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Public Databases for Bioinformatics !
...should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont want this...p.close() print "FINISHED" For use case 1 we obtained the following ENCODE and ROADMAP datasets htt...1130 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assay...ollowed by sequencing (ChIP-Seq). More information: https://genome.ucsc.edu/ENCODE/pilot.html3697 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...intervals and is over three orders of magnitude faster than existing methods. Its speed extends the accessibility and utility of resources such as ENCODE, Roadmap Epigenomics, and GTE...2298 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors...1247 days ago
- ...3D genome structure for any given gene. You can also check the expression of any queried gene across hundreds of tissue/cell types measured by the ENCODE consortium. Finally, please c...
1190 days ago
- The ENCODE project uses Reference Genomes from NCBI or UCSC to provi...stent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently...
954 days ago
