Results for "Linux"

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  • Installing Perl environment on Linux

    By using plenv, you can easily install and switch among different version of Perl. This will be installed under your home directory in~/.plenv. Install latest Perl (with supporting multithreading) and CPANMinus. $ cd $ git clone git://github.com/tokuhirom/plenv.git ~/.plenv $ git clon...

    Tags: Install, Perl, environment, Linux, plenv, CPAN, CPANMinus

    2312 days ago

  • Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals

    The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. File System ls — list items in current directory ls -l — list items in current directory and sh...

    Tags: Linux, Commands, Cheat, Sheet, Bioinformatics, Computational, Biology, Professionals

    2271 days ago

  • Glob multiple files in Linux with Perl. my @soundfiles = grep {/\.(wav|mid|mp3|rm|ogg)$/i} glob("*"); #Perl #Linux #Glob

    Tags: Perl, Linux, Glob

    2219 days ago

  • Creating conda environment for python2.7

    TIP: By default, environments are installed into the envs directory in your conda directory. Run conda create --help for information on specifying a different path. Use the Terminal or an Anaconda Prompt for the following steps. To create an environment: c...

    Tags: Creat, conda, environment, python2.7, python, Linux

    2181 days ago

  • Installing Bandage on Ubunty !

    The following instructions successfully build Bandage (https://github.com/rrwick/Bandage ) on a fresh installation of Ubuntu 14.04: Ensure the package lists are up-to-date: sudo apt-get update Install prerequisite packages: sudo apt-get install build-essential git qtbase5-dev libqt5...

    Tags: Install, Bandage, Ubuntu, Linux, Make, Tools, Genome, Assembly

    2180 days ago

  • To upgrade the perl in Linux $ sudo cpan; cpan[1]> upgrade #Perl #Upgrade #Linux #Ubuntu

    Tags: Perl, Upgrade, Linux, Ubuntu

    2142 days ago

  • Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

    Tags: fasta, otherthanATGC, replace, sed, Linux, illegal

    2135 days ago

  • Get unique ids from column 1 in Linux. $ cat output_file | cut -f 1 | sort | uniq > allUniqOUT #Unique #Linux #Cut

    Tags: Unique, Linux, Cut

    2129 days ago

  • du -sh * | sort | grep "G" #List size of all the directory #Size #List #Directory #Linux

    Tags: List, Size, List, Directory, Linux

    2090 days ago

  • cat /etc/*-release #System #version #Linux

    Tags: System, version, Linux

    2082 days ago