Results for "Long"

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  • FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads

    FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.

    Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, FinisherSC

    55 days ago

  • PBSuite: Software for Long-Read Sequencing Data from PacBio

    PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly autom...

    Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, Improve, PBSuite, PBJelly, PBHoney

    55 days ago

  • LoRDEC: a hybrid error correction program for long, PacBio reads

    LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and ...

    Tags: Bioinformatics, LoRDEC, Hybrid, Error, Correction, Program, Long, PacBio, Reads, Illumina

    14 days ago

  • DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

    DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies Our work is published in Scientific Reports: Ye, C. et al. DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologi...

    Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, DBG2OLC

    4 days ago