Results for "MD"
Top-level pages
...an atomic scale, and motions have to be simulated by molecular dynamics (MD) simulations. Also free energ...en binding energies of different protein ligands) can be characterized by MD simulations. Molecular mechan...3939 days ago
- ...//www.maths.mu.oz.au/~moshe/dp/bibl/bibliography.html•http://cartan.gmd.de/PAPER/ismb95/ismb_html.htm...ttp://www.cse.ucsc.edu/research/compbio/ Hmms •http://www.medmicro.mds.qmw.ac.uk/HMMER/main.html&bu...
3938 days ago
Phylogenetic for Bioinformatics
...lant_science/psgendb/doc/Phylip/main.htmlAn Introduction to Molecular Phylogeny: http://bibiserv.techfak.uni-bielefeld.de/gcb04/tutorials/hoef-emden/GCB04Tut.pdf How to make a...3938 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the exte...3935 days ago
List of pharmacogenomics companies worldwide
...m www.phenopath.com www.ppgx.com www.prometheuslabs.com www.protogene.com www.questdiagnostics.com www.rigelinc.com www.rii.com www.saladax.com www.tmdlab.com www.transgenomic.com w...3913 days ago
Structure of Binary files used for storing sequencing data-bam and sff
...p://samtools.sourceforge.net/SAMv1.pdf (from page 12) sff file (for Ion torrent and 454 files): http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&...3911 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevan...3771 days ago
List of In-silico Binding Site Prediction Tools
...aining a single frame or multiple frames generated by molecular dynamics (MD) simulations. MolAxis handles...tly available as command line driven program. A GUI is in development and mdpocket (fpocket on md trajecto...3735 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...nt files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets. http://useq.sourceforge.net/cmdlnmenus.html#rnaseqsimulatorRo...3729 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides...3616 days ago
