Results for "Map"
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irishgrid: Irish Grid Mapping System
Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishGrid includes: native support of the Irish Grid System (see http://www.osi.ie/) optimize for speed (there's as le...Tags: Bioinformatics, Computational Biology, Perl, Module, Map, Grid, Isris
3409 days ago
- segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to map primer- or polyadenylation conta...
Tags: Bioinformatics, FASTQ, Reads, Map, Mapping, Segemehl, NGS
2908 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roch...Tags: Bioinformatics, NGS, MOSAIK, Algorithm, Short-Read, Mapping, Genomics, Map, Tool
2897 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation ...
Tags: Bioinformatics, NGS, Stampy, Reads, Mapping, Map
2897 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in terms of available computational resources as well a...
Tags: Bioinformatics, Analysis, NGS, HeatMap, Genome, Shinyheatmap, R, Visualize, Map, Transcriptomics, Metabolomics, Metagenomics
2744 days ago
Genetic-mapper: SVG Genetic Map Drawer
Genetic-mapper is a perl script able to draw publication-ready vectorial genetic maps. Perl script for creating a publication-ready vectorial genetic/linkage map in Scalable Vector Graphics (SVG) format. The resulting file can either be submitted for publication and edited with any vectorial dra...Tags: Genetic-mapper, SVG, Genetic, Map, Drawer, Perl
2503 days ago
- The consequences of alterations in the DNA of cancer cells and subsequent vulnerabilities are not fully understood. This project aims to assign a dependency to every cancer cell in a patient which could be exploited to develop new therapies. This knowledge is foundational for precision cancer med...
Tags: Cancer, Dependency, Map
1534 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple genomes that are believed to have evolved from the same region in an ancestral genome. However, it has been pointed ...Tags: Mercator, Multiple, Whole-Genome, Orthology, Map, Construction, orthologous, homologous, paralogous, Synteny, ancetral
1437 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed. Scales easily to multi-gigabase genomes a...Tags: JBrowse, Embeddable, genome, browser, genome, reads, view, map, JavaScript, HTML5
2128 days ago
Heatmapper: web-enabled heat mapping for all
Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that allows users to easily create a wide variety of heat maps for many different data types and ...Tags: Heatmapper, web-enabled, web, heat, map, mapping, all, online, tool
2034 days ago
