Results for "Map"

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  • irishgrid: Irish Grid Mapping System

    Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishGrid includes: native support of the Irish Grid System (see http://www.osi.ie/) optimize for speed (there's as le...

    Tags: Bioinformatics, Computational Biology, Perl, Module, Map, Grid, Isris

    1000 days ago

  • segemehl

    segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to map primer- or polyadenylation conta...

    Tags: Bioinformatics, FASTQ, Reads, Map, Mapping, Segemehl, NGS

    499 days ago

  • MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

    MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roch...

    Tags: Bioinformatics, NGS, MOSAIK, Algorithm, Short-Read, Mapping, Genomics, Map, Tool

    488 days ago

  • Stampy

    Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation ...

    Tags: Bioinformatics, NGS, Stampy, Reads, Mapping, Map

    488 days ago

  • Shinyheatmap

    Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in terms of available computational resources as well a...

    Tags: Bioinformatics, Analysis, NGS, HeatMap, Genome, Shinyheatmap, R, Visualize, Map, Transcriptomics, Metabolomics, Metagenomics

    335 days ago

  • Genetic-mapper: SVG Genetic Map Drawer

    Genetic-mapper is a perl script able to draw publication-ready vectorial genetic maps. Perl script for creating a publication-ready vectorial genetic/linkage map in Scalable Vector Graphics (SVG) format. The resulting file can either be submitted for publication and edited with any vectorial dra...

    Tags: Genetic-mapper, SVG, Genetic, Map, Drawer, Perl

    95 days ago

  • TABLET: Using Tablet for visual exploration of second-generation sequencing data

    Tablet features:     High-performance visualization and data navigation.     Display of reads in both packed and stacked formats.     File format support for ACE, AFG, MAQ, SOAP2, SAM, BAM, FASTA, FASTQ, and GFF3.     Import GFF3, ...

    Tags: TABLET, visual, exploration, second-generation, sequencing, data, NGS, Map

    13 days ago