Results for "PIPE"
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Most Commonly used Awk by Bioinformatician
...erl, awk is simpler in many practical cases. Why awk? You can replace a pipeline of 'stuff | grep | sed |...aster to do it all with one. This is ideal for something like an openbox pipe menu where you want to genera...3904 days ago
- ...u want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f",..."/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq","r") ,stdout=PIPE,stderr=PIPE) print p.stderr...
3541 days ago
- ...e to standard out, allowing it to be easily dropped into the middle of a pipeline for format conversion. Re...rides interleaving autodetection, to ensure reads are treated as pairs) Pipe in a gzipped sam file and pip...
2705 days ago
Perl Special Vars Quick Reference
...eporting $? Child error. Status code of most recent system call or pipe. $! Operating System Er...l error. ${^CHILD_ERROR_NATIVE} Native status returned by the last pipe close, backtick (`` ) command...2636 days ago
Installing Bio::SCF perl module
...pecify prototyping behavior for SCF.xs (see perlxs manual)x86_64-linux-gnu-gcc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGE...2210 days ago
- ...(seqlen + length($0) > 200) $0 = substr($0, 1, 200-seqlen);\ seqlen += length($0); print }' scaffolds.fasta > 200bp_scaffolds.fasta To pipe a compressed fasta file direc...
2209 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspec...2194 days ago
