Results for "PSI Blast"
Top-level pages
...e searches have become readily available through the introduction of PsiBLAST [3]; studying evolutionary...TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI–BLAST: a new generation o...3938 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page p...arson talks about Protein Evolution Biological Sequences and Information BLAST HELP MANUAL BLAST tutorial Pedestrian guide to...3121 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can e...you will like the list. Sequence Analysis and General Bioinformatics BLAST, Ian Korf, Mark Yandell, Jose...3908 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app th...nation with other zip apps, and also web-tools like Blast, this app allows you to analy...nation with other zip apps, and also web-tools like Blast, this app allows you to analy...3532 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...offers database search (Genbank, Blast, Pubmed); 2000 organization...o acid residues- collected though PSI-BLAST; can be applied to nonsynonym...d VEP), HTML summary files SnpSIFT Description: Filter and ma...tural effects of a mutation; Uses BLAST against UniProt and PDB along...2900 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s...all matches, or do a reciprocal BLAST, or something. As with most...this tutorial by converting the BLAST output in out.txt into a spre...uo;re looking to run the script blast/blast-to-csv.py using Python:...2328 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystem...nd is accessible at: http://www.cbrc.kaust.edu.sa/BEACON/. BlastKOLA: Assigns K numbers to the user's sequence data by BLAST searches, respectively, again...2322 days ago
List of visualization tools for network biology
...ion of interaction networks. Gene Ontology and PSI-MI formats supported http://...rk http://hub.iis.sinica.edu.tw/Hubba NetworkBLAST Analysis of protein in...volution http://www.cs.tau.ac.il/~bnet/networkblast.htm Pathview Tool set...2279 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to gen...E discovery and TE detection: BLASTER suite http://urgi.versailles.inra.fr/development/blaster/ Censor http://.../mak06.html MaskerAid http://blast.wustl.edu/maskeraid/ mer-en...em.vt.edu/dl_software.htm WU-BLAST http://blast.wustl.edu2265 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint...://www.nature.com/articles/nrc2591 bioinformatics - BLAST DNA Sequences Reversed - Biol...e https://biology.stackexchange.com/questions/8160/blast-dna-sequences-reversed LASTZ...2232 days ago
