REAPR: a universal tool for genome assembly evaluation
...hat evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a referen...The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a B...2942 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...(TRAILING:3) Scan the read with a 4-base wide sliding window, cutting when the average quality per base drops below 15 (SLIDINGWINDOW:4:15) Drop reads below the 36 bases long (MINL...2934 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
...storing sequencing files (your own data or from public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome Manipu...2923 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...is a read mapper that is designed to map short reads to reference genome with a sp...and segmental duplications. mrFAST maps short reads with respect to user defined...d 'all' mappings for a given set of reads, however it can return one "b...2923 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...o analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of...2920 days ago
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