Results for "Reads"
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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major se...2898 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference...mic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain seque...
2898 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences s...e, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accep...
2157 days ago
CovCal: Coverage / Read Count Calculator
...culator written by James Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage...),L = Read length (bp), G = Haploid genome size (bp), and N = Number of reads. Source code on GitHub.2157 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes...SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution seq...
2865 days ago
- ...accurate results, A5-miseq requires Illumina data with certain characteristics. A5-miseq will likely not work well with Illumina reads shorter than around 80nt, or reads where the base qualities are...
2809 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...n achieves classification accuracy comparable to the fastest BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909 times faster...2860 days ago
- ...tion of metagenomic high-throughput sequencing reads. Each read is directly assign...gi and microbial eukaryotes. Kaiju translates reads into amino acid sequences, wh...ment. The search can process up to millions of reads per minute using, for example...
2860 days ago
- ...cs. No scripting skills required. Powerful. MEGAN6 allows you to work with hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis can be p...
2833 days ago
- ...ods are adaptive and support heterogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to 30 genome...
2790 days ago
