Results for "SAM"
Top-level pages
...reduces an instance of a problem to one or more smaller instances of the same problem (usually recursively...lecture/nlp18new/index.htm•http://www.cse.ucsc.edu/research/compbio/sam.html SAM Software for HM...3938 days ago
Bioinformatics Courses Around the World
...Computational Biology (Newark, New Jersey) Sequence Alignment and Modeling System (Documentation for SAM) Technical University of Den...3935 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...e tools The Sequence Alignment/Map format and SAMtools. Li et al, Bioinformatics 25(16):2078-9, 2009 PubMedCentral SAM format specification file Ef...in the EC2 environment A webpage that has the same information in text form, an...3771 days ago
List of bioinformatics open source projects/software.
...on of biological pathways REDCRAFT software for determining tertiary protein structure given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite,...3748 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...llele data frequencies http://www.ensam.inra.fr/urlb/bottleneck/bottl...imal set of parameters. http://flux.sammeth.net/simulator.htmlForSim...statistical genetics by generating samples of family data based on u...#metasimRNA Seq Simulator RSS takes SAM alignment files from RNA-Seq...3729 days ago
Perl one-liner for bioinformatician !!!
...of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.), there...3620 days ago
Next generation sequencing in R or bioconductor environment
...ges like GenomicRanges, ShortRead, Rsamtools, etc. Documentation...-Seq packages including ShortRead, Rsamtools, rtracklayer, GenomicFea...exa/Illumina reads. Documentation Rsamtools Rsamtools provides func...statistical methods. The following sample code introduces the identi...3616 days ago
Commercial and public next-gen-seq (NGS) software
...epsilon-matches between two sequences; SWIFT BALSAM — a very fast program t...epsilon-matches between two sequences. SWIFT BALSAM — a very fast program t...cs Lab at Sun-Yat Sen University, China. Linux. SAM - Sequence Assembly Manager....3510 days ago
Software packages for next gen sequence analysis
...ch, guaranteeing to find epsilon-matches between two sequences. SWIFT BALSAM — a very fast program t...seeds. Authors are Kim Rasmussen (SWIFT) and Wolfgang Gerlach (SWIFT BALSAM) * SXOligoSearch - SXOligoSea...3234 days ago
- ...n inter-convert: fastq fasta fasta+qual sam scarf (an old Illumina format) bam (if samtools is installed) gzip zip a...rams (base composition, quality, etc) Subsampling (to a fraction of input...a shortcut if paired read files have the same name with a 1 and a 2. This...
2705 days ago
