Results for "Seq"
Top-level pages
Bioinformatics Courses Around the World
...se individual research programs. Consequently, we have not included a...ional analysis of biomacromolecular sequences; 2. computational analy...ge, James Bonfield, three-day courseSequencing Project Management Usi...2677 (bioinformatics: computational sequence analysis of biological m...3935 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...nt storage of high throughput sequencing data using reference-b...PubMedCentral Correction of sequencing errors in a mixed set...Comprehensive analysis of RNA-Seq data reveals extensive RNA ed...ery and genetic mapping using sequenced RAD markers. Baird et a...3771 days ago
List of bioinformatics open source projects/software.
...BL), Gene Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy En.../emboss.sourceforge.net/ Suite of packages for sequencing, searching, etc. Gagg...tary Vector NTI, a tool to analyze and edit DNA sequence files Integrated Genome...3748 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...adinstitute.org/~sfs/cosi/CS-PSeq-Gen A program to simulate the...xperimental pipelines for RNA-Seq, employing a minimal set of p...raphael.leblois.free.fr/indel-Seq-Gen A biological sequence sim...l to generate data of related sequences along a given phylogeny...3729 days ago
Next generation sequencing in R or bioconductor environment
...es within Bioconductor's BioC-Seq domain. Its classes and metho...additional information about sequence ranges, such as chromoso...with a Biostring based genome sequence. BSgenome packages exist...ocumentation Additional ChIP-Seq Packages DiffBind: Documenta...3616 days ago
Commercial and public next-gen-seq (NGS) software
...llection for fast index-based sequence comparison. It contains...ent Program) for mRNA and EST Sequences. Developed by Thomas Wu...llection for fast index-based sequence comparison. It contains:...en's lab at UCLA). POSIX. CHiPSeq - Program used by Johnson et...3510 days ago
Software packages for next gen sequence analysis
...ighted tool that aligns short sequences to a sequence database,...lignment of finished or draft sequence. Released as a package p...e * ABySS - Assembly By Short Sequences. ABySS is a de novo seq...ts and SNP detection of short sequence reads. From the Evolutio...3234 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Gen...of true SNPs and indels from sequencing and mapping errors, la...or samples using whole genome sequencing data” Input: de...tes variants from whole-exome sequencing data; Based on Jannova...2900 days ago
Genome Assembly Tools and Software - PART1 !!
...ee major stages. First, query sequences are aligned with a refe...ed-end reads to the assembled sequence. Structure variation and...Phrap/Consed 29.0 – DNA Sequence Assembler & Finishin...ression and regulation in RNA-Seq samples. It accepts aligned R...2677 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...sion of transcripts using RNA-seq data (uses k-mers) http...sp;k-mers profiles of the RNA-seq paired-end reads Software (J...ly with error-containing long sequence (e.g., ONT or PacBio rea...eads based on a comprehensive sequence database Software (C++)...2363 days ago
