BOL: Results for "Short"

Results for "Short"

- Jit@jit.aber
Resume the MIRA assembler run !
...Change working directory -r / --resume Resume an interupted assembly -h / --help Print short help and exit -v / --versi...
1725 days ago
- Jit@jit.aber
Downloading GATK !
...---------------------------------------------------------------------- Short Variant Discovery: Tools that perform variant calling and genotyping for short variants (SNPs, SNVs and Inde...
2066 days ago
- Neelam Jha@neelam
Bash script to alignment of short reads against reference genome !
...a markdup SRR341549.raw.sorted.minimap2.bam SRR341549.minimap2.bam #The only major change from bwa mem is that we'll tell it we're working with short read data using -ax sr:
1550 days ago
- Rahul Nayak@rahul
Awk command to keep only short the fasta header !
awk '/^>/ {$0=$1} 1' file.fasta
700 days ago
- Jit@jit.aber
Blast short sequences !
(jitENV) [jnarayan@hn1 preetiDATA]$ blastn -task blastn -query list_flank_0.fa -subject ../monkeypoxDATA_07_06_22/JIT_gisaid_pox_2022_09_06_07.fasta -evalue 20000000 -word_size 5 -num_threads 4 -outfmt 6 -out blastn_0.txt -qcov_hsp_perc 100 -perc_identity 100 -max_target_seqs 10000
583 days ago