Results for "String"
Comments
DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation1137 days ago
- ...d: '4.7m' equals '4700k' equals '4700000' Some common options: useGrid=string - Run under grid control (tru...ts are 0.045 for PacBio reads and 0.144 for Nanopore reads. gridOptions=string - Pass string to the command...
2090 days ago
Comment on "Installing Perl environment on Linux"
...-1.007002 ... OK==> Found dependencies: Data::Stag, URI::Escape, IO::String, Test::Most--> Working on...z ... OKConfiguring Data-Stag-0.14 ... OK==> Found dependencies: IO::String--> Working on IO::StringFe...2117 days ago
Comment on "BLAST+ updated !!!"
...verhang float_value] [-best_hit_score_edge float_value] [-window_size int_value] [-off_diagonal_range int_value] [-use_index boolean] [-index_name string] [-lcase_masking] [-query_loc...2508 days ago
- ...: Contig_file (fasta format) String "cov" in title lines are...f a title does not consits of string "cov",...
2790 days ago
Comment on "Generating a random string with Perl"
Hmmm interesting, but I prefer Perl module String::Random; use String::Random;my $pass = String::Random->new;print "Your password is ", $pass->randpattern("CCcc!ccn"), "\n"; This would output something like this:Your password is UDwp$tj52898 days ago
- Try this $string =~ s/\Q$find\E/$replace/g;
3549 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment of the reads, finding duplicates, trimming, string pattern searches [1] Biostrings – Reading sequences in R [2] BSGenomes – Reading in...3661 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
One of my favourite lecture notes on "String Matching Problems and Bioinformatics" http://users.csc.calpoly.edu/~dekhtyar/448-Spring2013/lectures/lec03.448.pdf3820 days ago
- I prefer Perl becuse Perl Scripts are very easy for the String processing for Biological data like Genome sequences and protein sequences. In addition, there is no strict ru...
3880 days ago
