Results for "Syntenic Regions"
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Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Serve...w.encodeproject.org/files/ENCFF059BEU/@@download/ENCFF059BEU.bam. Blacklisted regions were obtained from http:...1130 days ago
- ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between different genomic regions (a) as determined by Hi-C (ht...
3410 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned c...
2970 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or...NTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions, and then tries to extend the...2916 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promo...expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can...
2860 days ago
- Records in 4DGenome are compiled through comprehensive literature curation of experime...ly available in a standardized file format. Records can be queried by genomic regions, gene names, organism, and de...
2854 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a referen...l-length transcriptome assembler. This means that it will output the variable regions of the transcripts, not recon...
2810 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary I...Bs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The numb...2725 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genom...rthologs for more than 90% of genes and intergenic regions across the four species despi...pondence revealed recent gene family expansions in regions of rapid genomic change. We...2725 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference...
2789 days ago
