Results for "annotation"

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  • Genome Browsers

    Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available browsers: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome....

    Tags: Genome Browser, Organism, Plant, Animal, Bacteria, fungi, Genome Sequence, DNA, Sequencing, Annotation, SNP, gff, gtf, gff3, vcf, bed

    1581 days ago

  • Genome Annotation

    Dr. Rob Edwards describes some of the problems, challenges, and approches in genome annotation, with a particular emphasis on how the Fellowship for the Interpretation of Genomes (FIG) developed subsystems using the SEED database available at http://www.theseed.org/

    Tags: Genomes, Annotation

    1572 days ago

  • List of gene ontology software and tools

    The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is designed to rigorously encapsulate the known relationships between biological terms and and all genes that are instances of these ...

    Tags: GO, Gene, Ontology, Gene Ontology, Enrichments, Pathway, Annotation

    1376 days ago

  • Annotating a sequence not yet published

    I have 198,991 bp long sequence. I ran it through Maker, Glimmer and GeneMarkS. All three gave me different number of predicted genes.Here I am talking about genes that I got through GeneMarkS.Now when I am using BlastX to find the similar genes, I sometimes get highly dissimilar results. What do...

    Tags: denovo, Annotation

    1316 days ago

  • http://mygene.info/ #Gene #Annotation #Query

    Tags: Gene, Annotation, Query

    1269 days ago

  • Protein function annotation and machine learning - UPMC - Paris, France

    Protein function annotation and machine learning - UPMC - Paris, France Job Description: We are interested in finding an excellent postdoc with interests in protein functional annotation, machine learning and computer grids. The position is open for 3.5 years at the Université Pierre et Marie ...

    Tags: Bioinformatics, Computational Biology, Jobs, PostDoc, France, Paris, Research, Protein, Annotation, Evolution

    1231 days ago

  • http://mygene.info/ #Gene #Annotation

    Tags: Gene, Annotation

    1172 days ago

  • A Dockerized Next Generation Sequencing Pipeline http://khp-informatics.github.io/ngs/ #NGS #Docker #Annotation

    Tags: NGS, Docker, Annotation

    1020 days ago

  • MAKER

    MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-ini...

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, MAKER, Genome, Annotation, Pipeline, NGS, Assembly

    676 days ago

  • BUSCO

    Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, BUSCO, Genome, Annotation, Pipeline, NGS, Assembly, Orthologs

    676 days ago