Results for "assembly"
Top-level pages
...t al. (2001) The sequence of the human genome. Science 291:1304–1351R.D. Fleischmann et al. (1995) Whole–genome random sequencing and assembly of haemophilus–influenz...3938 days ago
- ...short mRNA sequence, and complex submissio Staden The Staden Package consists of a series of tools for DNA sequence preparation (pregap4), assembly (gap4), editing (gap4) and DN...
3933 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ilitates improved mapping and assembly of GC-biased genomes. Kozarew...2011. PubMedCentral De novo assembly Velvet: algorithms for de n...essment of de novo short read assembly methods. Earl et al, Genome R...aired-end RAD-seq for de novo assembly and marker design without ava...3770 days ago
List of bioinformatics open source projects/software.
...upling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden Package Sequence assembly, editing and analysis, primar...3748 days ago
Commercial and public next-gen-seq (NGS) software
...ors" into mini-contigs before assembly. Includes SNP detection, CHiP...ource/Unix. MAQ - Mapping and Assembly with Qualities (renamed from...e novo Align/Assemble ABySS - Assembly By Short Sequences. ABySS is...genome (without any ab initio assembly of the reads), and all the po...3510 days ago
Software packages for next gen sequence analysis
...ors" into mini-contigs before assembly. Includes SNP detection, CHiP...rce/Unix. * MAQ - Mapping and Assembly with Qualities (renamed from...novo Align/Assemble * ABySS - Assembly By Short Sequences. ABySS is...genome (without any ab initio assembly of the reads), and all the po...3233 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s BioSciences” De novo assembly: “In addition to Sanger...ive NGS software pipeline for assembly, alignment, variant calling a...reference genome or de novo assembly not needed Output: LoFr...ome; performs localized micro-assembly of specific regions of intere...2899 days ago
Genome Assembly Tools and Software - PART1 !!
...re for automatic DNA sequence assembly , DNA sequence analysis, cont...g-Based De Novo Transcriptome Assembly from RNA-seq Data BinPacke...– de novo Transcriptome Assembly pipeline from stranded RNA-Se...Sequence Assembler ABySS (Assembly By Short Sequences) is a de n...2676 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...of k-mers) Software (C) https://github.com/lh3/minimap Assembly De novo genome assembly MHAP Produces highly contin...of metagenome sequences and the distances between them based on assembly using de Bruijn graphs and Br...2362 days ago
- ...es remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s g...minion.fastq \ -o hybrid_assembly In turn, these parameter...the output in folder “hybrid_assembly”...
2342 days ago
