Results for "classification"
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Kraken: ultrafast metagenomic sequence classification using exact alignments
...faster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves classification accuracy comparable to the fa...2860 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequ...y other protein database without taxonomic classification, using either protein or nucl...et al. (2016) Fast and sensitive taxonomic classification for metagenomics with Kaiju....
2860 days ago
- ...in analyzing a metagenome is phylogenetic classification of raw sequence reads into gr...esenting the same or similar species. Such classification is a useful prerequisite for...long-read technologies. Phymm, a new classification approach for metagenomics dat...
2755 days ago
Metagenomics assembly workshop !!
...Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning MaxBin Binning MetaBAT Binning Classification Kraken Taxonomic Sequence Classification System Next&nb...2565 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...p;and CAT. All data in dbCAN are generated based on the family classification from CAZy database ...l CAZyme catalysts in metagenomes; dbCAN provides a subfamily classification of the existing CAZyme f...2524 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...con is a web-server for the prediction and classification of non-coding RNAs. It uses S...andomForest-based prediction model for the classification of ncRNAs into different clas...and Raghava, G.P.S. (2014) Prediction and classification of ncRNAs using structural in...2475 days ago
LIBSVM -- A Library for Support Vector Machines
...an integrated software for support vector classification, (C-SVC, nu-SVC), regres...n (one-class SVM). It supports multi-class classification. Since version 2.8, it imple...nt SVM formulations Efficient multi-class classification Cross validation for model s...2459 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...bining homology predictions from BLAST or UBLAST with compositional classifications from a Naive Bayes classifie...t classified in this manner are subjected to a series of downstream classification steps. This work has been ac...2342 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2342 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...to find the overlaps between reads and does not require them to be error-corrected. After the initial assembly, Flye performs an extra repeat classification and analysis step to improve...2183 days ago
