Results for "ncbi"


  • Download mutliple fasta file from NCBI in one GO!!

    if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @A...

    Tags: fasta, multiple fasta, ncbi, entrez, perl

    1491 days ago

  • NCBI Remap

    NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It is also available through a simple web interface or you can use the API for NCBI Remap. More at http://www.ncbi...

    Tags: Bioinformatics, NCBI, NCBI Remap, Liftover, Annotation

    587 days ago

  • HistoneDB 2.0 – with variants

    This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To get started, select a histone typ...

    Tags: Bioinformatics, Histone, Database, DB, NCBI

    475 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined t...

    Tags: Bioinformatics, Entrez Direct, EDirect, NCBI, Databases, Functions, EDirect, XML, Format, Queries, EDirect, UNIX, Entrez.

    336 days ago

  • BioDownloader

    BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique features that are specifically designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 10,000 - 100,000). ...

    Tags: Bioinformatics, dunbrack, BioDownloader, NCBI, PDB, Database

    207 days ago

  • NCBI Prokaryotic Genome Annotation Pipeline

    NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, sma...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Annotation, NCBI, Pipeline, Prokaryotes

    127 days ago