Results for "parse"
Top-level pages
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link f...3911 days ago
Commercial and public next-gen-seq (NGS) software
...echfak.uni-bielefeld.de/swift/biolib.is library and a set of script targeted to NGS. There are modules to: clean sequences (sanger, 454, ilumina), parse caf, ace and bowtie map files...3510 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s based on alignment; haplotype based Input: BAM- uses BAMtools API to parse Reference genome: FASTA Out...scent-by-modification relationships; Written in Java Input: BAM files (parsed by Picard/Samtools API) Ref...2900 days ago
Awesome perl frameworks, libraries and software - PART 1
...ist to Perl) ingydotnet/pegex-pm - Pegex Parser for Perl ewels/ClusterFlow&...mCalculator-Scripts - Perl scripts, which parses the Valve's Steam store. ru...e of Mediathek rjbs/Mail-DeliveryStatus-BounceParser - perl library to parse...2480 days ago
Steps to find all the repeats in the genome !
...sker will generate several output files, including a .out file. You can parse this file to extract the info...is a Perl tool called "one_code_to_find_them_all.pl" that can help you parse RepeatMasker output files[0]....239 days ago
