Results for "quantification"
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"By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/3654 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...r biology, multiscale modeling, pathways,gene networks. Computational Proteomics: Filtering and indexing sequence databases, Peptide quantification and identification, Genome an...3490 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...for DNA-, RNA- and small-RNA-Seq. UMI support in Strand NGS is end-to-end, spanning alignment to variant calling in DNA-Seq, and alignment to quantification in RNA- and small-RNA-Seq. Th...2378 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2342 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...g=en You can find the original publication in GBE here: https://academic.oup.com/gbe/article/7/4/1192/533768 output examples of quantification and TE landscape (relative ag...2337 days ago
- ...scriptome assemblies. RapClust is designed to be run downstream of the Sailfish or Salmon tools for rapid transcript-level quantification. Specifically, RapClust relie...
2031 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
.... Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate as existing quantification tools. In fact, because the p...1936 days ago
- CroCo is a program to detect cross contamination events in assembled transcriptomes using sequencing reads to determine the true origin of every transcripts.Such cross cont...
1936 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional ...1418 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantification of bottom-up proteomics data. It is designed to be user-friendly, and has been optimized for speed a...1500 days ago
