Results for "reads"
Blogs
Computer simulation of genetic mechanism !!
...popgen MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxo...goldman-srv/phylosim/ pIRS Profile-based Illumina pair-end reads simulator https://code.google...2965 days ago
- ...t-analytical workflows in Strand NGS allow users to execute sequence analysis with stringent filtering to eliminate false positive and low quality reads. This simplifies the analysis...
2794 days ago
Structural variation: the hidden genomic treasure
...detection in next generation sequencing data (paired end mapping, split reads, and depth of coverage), arra...ructuralVariants.pdfBreakSeq, structural variant genotyping using split reads Link CopySeq, genot...2693 days ago
Software and Tools to detect structure variation with long reads !!
...ntification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp...ey considers both intra-read discordance and soft-clipped tails of long reads to identify structural varian...2598 days ago
String graph based genome assembly software and tools !
...ses. The first phase corrects base calling errors in the reads. The second phase assembles contigs from the corrected reads. The third phase uses paired...howing practical advantages in running FSG on multiple threads. Moreover, we have studied th...2319 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...3/bwa GraphMapMapper for long and error-prone readshttps://github.com/isovic/grap...nlr/LINKS/ marginAlignTools to align nanopore reads to a referencehttps://github....of assemblers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nano...2311 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be brok...GGGAAAAA In this case, all reads starting with "AAAAACCCCCTTTT...ault, "filterbyname" discards reads with names in your name list,...2261 days ago
- ...ra -Wno-deprecated -m64 -g -O2 -MT pull_reads_with_kmers.o -MD -MP -MF .deps/pull_reads_with_kmers.Tpo -c -o pull_rea...ISpines -fopenmp -c ./analysis/ReadsToTranscripts.cc -o obj/analys...: has been Installed Properly ReadsToTranscripts: has been I...
2124 days ago
Understating pacbio reads name !
...Part Number (usually "p0", "X0" when using expired reagents) ZMW hole number Subread Region (start_stop using polymerase read coordinates) readScore barcodeScore...1980 days ago
Understanding reads mapping and flags !
...by the supplementary alignment flag. Chimeric reads are indicative of structural...ric genes in RNA-seq. In short, chimeric reads can be split in to two or mor...that GATK can realignment those representative reads to the correctly position via...1827 days ago
