Results for "visualization"

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  • 3D genome data and tool http://bengal.missouri.edu/~chengji/nsf_career.html #Chromosome #HiC #Analysis #Construction #Visualization #Modeling #3D #Genome #Structures

    Tags: Chromosome, HiC, Analysis, Construction, Visualization, Modeling, 3D, Genome, Structures

    893 days ago

  • PhyloGrapher - Graph Visualization Tool

    PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use PhyloGrapher&nb...

    Tags: Bioinformatics, Computational Biology, Visualization, Ghraph, Comparison, Accuracy

    684 days ago

  • MEDEA: Comparative Genomic Visualization with Adobe Flash

    As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual system to detect trends and spot outliers is necessary in such large and complex data sets. More at http:/...

    Tags: Bioinformatics, NGS, Visualization, Chromosome, Comparative genomics

    664 days ago

  • Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences

    Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For visualisation, Smash outputs a SVG image, with an ...

    Tags: Bioinformatics, Visualization, Alignment, Free, NGS, Comparative Genomics

    664 days ago

  • RCircos: an R package for Circos 2D track plots

    RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to generate comple...

    Tags: Bioinformatics, NGS, R, Rcircos, Package, Plot, Circle, Genome, Genes, Visualization

    640 days ago

  • Cytoscape

    Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

    Tags: Bioinformatics, Cytoscape, Software, Platform, Visualization, Networks, GO

    638 days ago

  • Blobsplorer

    Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of contigs with a view to separating out th...

    Tags: Bioinformatics, Blobsplorer, Visualization, Assembled DNA, Sequence, contigs, Species, Pools.

    615 days ago

  • Anvio

    In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi’o would not have been possible without the help of many people who directly or indirectly contributed to its development. ...

    Tags: Bioinformatics, Analysis, Visualization, Platform, Omics, NGS, Anvio

    613 days ago

  • #Network #Visualization in #R #Tutorial http://kateto.net/network-visualization

    Tags: Network, Visualization, R, Tutorial

    605 days ago

  • QuIN’s web server

    Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal genomic locations can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA...

    Tags: Bioinformatics, Analysis, Visualization, Chromatin, NGS, HiC

    602 days ago