Abhimanyu Singh commented on an answer to a question 4687 days ago
There are long list of software, but following listed tools will be useful for bacterial based analysis work.
Short read alignment
•bwa – external link:http://bio-bwa.sourceforge.net
•samtools – external...
Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis...
This survey conducted by Oxford Gene Technology, provider of innovative genetics research and biomarker solutions to advance molecular medicine, has released the results from a recent survey of researchers...
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs .
Alternatively, use one liner perl script:
perl -ne...
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references.
Title: Comparison of Short Read De Novo Alignment Algorithms
Author: Nikhil Gopal