Latest activity
Rahul Nayak commented on a bookmark Recombination detection tool- Jit bookmarked Recombination detection toolComments
- Rahul Nayak 3876 days ago
Intersting bookmark Jit, you can also try Recombination Detection Program (RDP) http://web.cbio.uct.ac.za/~darren/rdp.html
- Jitendra Narayan 3875 days ago
Using population genomic data http://arxiv.org/ftp/arxiv/papers/1403/1403.4264.pdf to detect recombination hotspot.
- Aasha posted a new ad in the Opportunity Research Fellow Bioinformatics at Central University of Rajasthan
- Aasha is now a friend with Thangapandi
- Thangapandi is now a friend with Aasha
- Aasha is now a friend with Harshitha G R
- Harshitha G R is now a friend with Aasha
- Jitendra Narayan posted to the wire
- Rahul Nayak posted to the wire
- Rahul Nayak posted a new ad in the ResearchLabs Manolis Kellis Lab
- Rahul Nayak commented on a page titled Software packages for next gen sequence analysis in the group Next Generation Sequencing (NGS)
- Jitendra Narayan posted to the wire
- Rahul Nayak posted to the wire
- O. Gradoff is now a friend with Jitendra Narayan
- Jitendra Narayan is now a friend with O. Gradoff
- Abhimanyu Singh posted a new ad in the Opportunity Project Assistant at IISER Mohali
- Abhimanyu Singh is now a friend with Thangapandi
- Thangapandi is now a friend with Abhimanyu Singh
- Jitendra Narayan commented on a bookmark Alignment of closely related whole genomes/scaffolds in the group Next Generation Sequencing (NGS)
- Rahul Nayak bookmarked Alignment of closely related whole genomes/scaffolds in the group Next Generation Sequencing (NGS)Comments
- Jitendra Narayan 3880 days ago
Hmmm great link Rahul, You can also try Mugsy: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334
In my works, I have also used BWA-SW, BLAT and LASTZ. However, LASTZ is not well-suited for aligning to many chromosomes at once. Whereas, the BLAT is difficult as PSL to BAM conversion is imperfect in it.
