This useful repository contains the files from the course in de novo assembly https://github.com/lexnederbragt/denovo-assembly-tutorial
A field guide to whole-genome sequencing, assembly and annotation http://onlinelibrary.wiley.com/doi/10.1111/eva.12178/full
Informatics for RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial?