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BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java...

For video R tutorial you can visit youtube http://www.youtube.com/playlist?list=PL69A9CCD816A5F3A5

My favourate place to learn R http://www.cyclismo.org/tutorial/R/

Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. http://www.bioconductor.org/packages/2.12/bioc/html/Biostrings.html

Programming in Perl – with Applications in Bioinformatics  http://www.his.se/PageFiles/19968/Kompendium.pdf?epslanguage=sv

Learning To Program With Perl by Babraham Bioinformatics http://www.bioinformatics.babraham.ac.uk/training/Perl%20Introduction.pdf

Crash Course in Perl http://www.math.lsa.umich.edu/~dburns/547/damianPerl1.pdf

Mastering perl for Bioinformatics http://cbb.sjtu.edu.cn/course/database/mastering.pdf

Using perl for Bioinformatics http://web.mit.edu/seven/7.91/lesson1.pdf

This bookmark is created to store the useful Perl and BioPerl tutorial links at one place. Feel free to share and add more useful tutorial links here ....