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Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For...

AVID: A Global Alignment Program https://www.ncbi.nlm.nih.gov/pmc/articles/PMC430967/ #AVID #Alignment #Global #Sequence #Genome

Understanding and manipulating SAM/BAM alignment files http://homer.salk.edu/homer/basicTutorial/samfiles.html #SAM #BAM #File #Explain

Best way to visualize high-dimensional data. https://www.quora.com/Whats-the-best-way-to-visualize-high-dimensional-data #Visualization #Plot #HighDimention #R

#GC-Profile: a web-based tool for #visualizing and analyzing the #variation of #GC content in #genomic sequences https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538862/

Just_Annotate_My_proteins (JAMp) http://jamps.sourceforge.net/ #Protein #Annotate #JAMp

http://www.nature.com/cddis/journal/v8/n2/full/cddis201744a.html #Biomarkers #RNASeq #Cancer

I found App::cpanminus very handy in such cases. It create a local Perl5 directory in you profile. wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib` echo 'eval `perl -I...

I found App::cpanminus very handy in such cases. It create a local Perl5 directory in you profile. wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib` echo 'eval `perl -I...

Basics for assembly http://ged.msu.edu/angus/files/lecture4-mapping.pdf #Genome #Mapping #Assembly #PPT

When I tried Perl on my cluster/server it gives following error !! How to resolve it? $ perlperl: warning: Setting locale failed.perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_PAPER =...

Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two steps, at the...

When I tried Perl on my cluster/server it gives following error !! How to resolve it? $ perlperl: warning: Setting locale failed.perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_PAPER =...

When I tried Perl on my cluster/server it gives following error !! How to resolve it? $ perlperl: warning: Setting locale failed.perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_PAPER =...