BOL

VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for beginners to use, but VAGUE makes it clear and simple More...

Testing Random Dice Rolls http://blogs.perl.org/users/ovid/2014/01/testing-random-dice-rolls.html #Perl #Random #Test #Randomness #Dice

#GECA: a fast tool for #gene #evolution and #conservation analysis in #eukaryotic #protein #families. https://www.ncbi.nlm.nih.gov/pubmed/22467908

Inside DNA, Computing platform for reproducible research in bioinformatics, genomics and life science https://insidedna.me/

Structural variant detection and association testing https://github.com/zeeev/wham

ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given contig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can...

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For...

AVID: A Global Alignment Program https://www.ncbi.nlm.nih.gov/pmc/articles/PMC430967/ #AVID #Alignment #Global #Sequence #Genome

Understanding and manipulating SAM/BAM alignment files http://homer.salk.edu/homer/basicTutorial/samfiles.html #SAM #BAM #File #Explain

Best way to visualize high-dimensional data. https://www.quora.com/Whats-the-best-way-to-visualize-high-dimensional-data #Visualization #Plot #HighDimention #R

#GC-Profile: a web-based tool for #visualizing and analyzing the #variation of #GC content in #genomic sequences https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538862/

Just_Annotate_My_proteins (JAMp) http://jamps.sourceforge.net/ #Protein #Annotate #JAMp

http://www.nature.com/cddis/journal/v8/n2/full/cddis201744a.html #Biomarkers #RNASeq #Cancer